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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttataaaactattgttaaacatttgtttattgaatcaatttacttttcctatatgcacttcttgttgaaattggtctatctttaccctactttcagtacttaggttggtgggtgatgcctagtctgatttgcagttccattgcagGCATGGCTTTGTTGGGGTGTGATGTTATTGTGACAGACCAAAAGGAGGTTTTGCCATTGTTACAGAGAAATGTTGAGCGTAATATTTCAAGGATCACGCA

Basic information

species Glycine max
transcript GLYMA12G08490.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618377|gb|DB969375.1|DB969375
EST:     AGGAAAACGTGTAATTGAACTAGGAGCTGGCTGTGGTGTTTCTGGTATTG                         GCATGGCTTTGTTGGGGTGTGATGTTATTGTGACAGACCAAAAGGAGGTTT
genomic: AGGAAAACGTGTAATTGAACTAGGAGCTGGCTGTGGTGTTTCTGGTATTGgtgagttata ... tccattgcagGCATGGCTTTGTTGGGGTGTGATGTTATTGTGACAGACCAAAAGGAGGTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcagtacttaggttggtgggtgatgcctagtctgatttgcagttccattgcagGCATGGCTTTGTTGGGGTGTGATGTTATTGTGACAGACCAAAAGGAGGTTTTGCCATTGTTACAGAGAAATGTTGAGCGTAATATTTCAAGGATCACGCA
                               gtctgat  putative branch site (score: 4)
                                            ttccatt  putative PPT