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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGTCAAGTTTCTTgtaagctgtgtgctcctcacaatcacatgctctggaatgtcctgttactcttttcatgaatgcgaaagtttattagaccctaagtgtatttttacgtaac...

Basic information

species Glycine max
transcript GLYMA12G08490.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G471805_T01 (Zea mays), 5'ss of exon 3
GATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGTCAAGTTTCTTgtaagctgtgtgctcctcacaatcacatgctctggaatgtcctgttactcttttcatgaatgcgaaagtttattagaccctaagtgtatttttacgtaac---------------------------------------------------------
||||| || ||||||||| | ||||| || || |||||||||||| | ||||||||||||||  | ||||   || ||      |      | |  ||   |    |  |||  | |||  |    ||  |    ||| | |  |     | |  || || | ||                                                          
GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTGgtaattggtttgggttctaggcctccctagtccctaca--caagttgatgtttcaaatcttgaaatttcttactcgtactaggatttgcttctaaggaaaatgctcgtacttttatcaccgtcatcatgatcgtcatttcacggttgatctgtacag

upper sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0061g00490.t01 (Vitis vinifera), 5'ss of exon 5
GATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGTCAAGTTTCTTgtaagctgtgtgctcctcacaatcacatgctctggaatgtcctgttactcttttcatgaatgcgaaa--gtttattagaccctaagtgt---atttttacgtaac
||||||||||| ||||| ||||| ||||| || |||||||||||| | || ||||| || ||||| ||||  ||| |  |  |||   | | |   |  | | | |  |  | |     | |  ||| | |||  ||| ||  |       ||||   |||| || | |  
GATCCCAATTCGAAGCATTTAGGAACTACGGTTTGGGATGCATCAATGGTATTTGTGAAATTTCTGgtaa--tgtctattattcatt-tgagaattttagcattattttcatccatgggttaccaattcaaaattgttgatctgttgagttgtgttcaatttctatgca--

upper sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0017g01120.t01 (Vitis vinifera), 5'ss of exon 5
GATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGTCAAGTTTCTTgtaagctgtgtgctcctcacaatcacatgctctggaatgtcctgttactcttttcatgaatgcgaaa--gtttattagaccctaagtgt---atttttacgtaac
||||||||||| ||||| ||||| ||||| || |||||||||||| | || ||||| || ||||| ||||  ||| |  |  |||   | | |   |  | | | |  |  | |     | |  ||| | |||  ||| ||  |       ||||   |||| || | |  
GATCCCAATTCGAAGCATTTAGGAACTACGGTTTGGGATGCATCAATGGTATTTGTGAAATTTCTGgtaa--tgtctattattcatt-tgagaattttagcattattttcatccatgggttaccaattcaaaattgttgatctgttgagctgtgtttaatttctatgga--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618377|gb|DB969375.1|DB969375
EST:     ACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGTCAAGTTTCTT                         GAACGGAATTGCAGAAAGGGAAAGTTTTCCCCAGCTAAACTTAAAGGAAAA
genomic: ACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGTCAAGTTTCTTgtaagctgtg ... attgtttcagGAACGGAATTGCAGAAAGGGAAAGTTTTCCCCAGCTAAACTTAAAGGAAAA
EST: gi|12773344|gb|BG238271.1|BG238271
EST:     ACTTANGGACTACAGTATGGGATGCATCACTTGTGTTTGTCAAGTTTCTT                         GAACGGAATTGCAGAAAGGGAAAAGTTT-CCCCAGCTTAACTTTAAGGAAA
genomic: ACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGTCAAGTTTCTTgtaagctgtg ... attgtttcagGAACGGAATTGCAGAAAGGGAAA-GTTTTCCCCAGCTAAACTTAAAGGAAA