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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagtttttttttcttcttcttttagacacgatacaacattttttgtgttggttatttatttgtttatttgttagtgcatgaaaatggactttaccttc...

Basic information

species Glycine max
transcript GLYMA12G08470.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08470.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g00460.t01 (Vitis vinifera), 5'ss of exon 3
ATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagtttttttttcttcttcttttagacacgatacaacattttttgtgttggttatttatttgtttatt-tgttagtgc-atgaaaatggactttaccttc-----
||||   | || |||||||| ||||| || || ||||| ||||||||||| ||||| ||||||||||| ||||  | || ||   || ||     | | |  |  ||   |   || ||  |   ||||||  | ||| ||| ||  ||||  |||  |  |       
ATGTATCGGATTAAGGACCCTAAAGTCAGTCTCGATTTCTATTCTCGCGTATTGGGAATGTCgtaagtattttgattttttt---ttgga---attcctagttaattgacgagtgtgatacagcagtttatgatattaatgctatccaaatt-actgaaaatatatgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256266|gb|BQ453154.1|BQ453154
EST:     AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTC                         TTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
genomic: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagttttt ... gttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
EST: gi|17022376|gb|BM093410.1|BM093410
EST:     AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTC                         TTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
genomic: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagttttt ... gttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
EST: gi|23734537|gb|BU765505.1|BU765505
EST:     AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTC                         TTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT
genomic: AAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTCgtaagttttt ... gttggtttagTTTGCTTAAGAGATTGGATTTTCCGGAGATGAAGTTCAGCCTGTACTTCAT