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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggctagctttttctaatttagtagtattatattattgttcttgtgtatttcaggagtttgattttttttaatgttatttcaattgcagATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTC

Basic information

species Glycine max
transcript GLYMA12G08470.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256266|gb|BQ453154.1|BQ453154
EST:     TTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACT                         ATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTC
genomic: TTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACTgtgggctagc ... tcaattgcagATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTC
EST: gi|17022376|gb|BM093410.1|BM093410
EST:     TTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACT                         ATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTC
genomic: TTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACTgtgggctagc ... tcaattgcagATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTC
EST: gi|23734537|gb|BU765505.1|BU765505
EST:     TTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACT                         ATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTC
genomic: TTCACACTACCCCTGACGAAGCCACCAAGGGTTACATCATGCAACAAACTgtgggctagc ... tcaattgcagATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttcttgtgtatttcaggagtttgattttttttaatgttatttcaattgcagATGTTCAGAATCAAGGACCCCAAAGTGAGCCTTGATTTTTATTCTCGCGTCTTGGGCATGTC
                                ttttaat  putative branch site (score: 3)
                                        ttatttc  CT-rich tract
                     agtttgatttttttta  TA-rich tract