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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGCTGAGACTGCAGCTTCAATGGCAGTAGCTGTAACTGTTGTTGGTGCAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaacttatctttattgtttgtttcaataaaataactaattgtgcttacaagccaccttgtttttccaaacaagaacatgaaaatctttggaatgc...

Basic information

species Glycine max
transcript GLYMA12G08390.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4405528|gb|AI507677.1|AI507677
EST:     CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAG                         ATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGGATATTGTTCTGA
genomic: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaact ... gaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATAT-GTTCTGA
EST: gi|22522921|gb|BU081732.1|BU081732
EST:     CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAG                         ATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
genomic: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaact ... gaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
EST: gi|7795276|gb|AW780673.1|AW780673
EST:     CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAG                         ATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
genomic: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaact ... gaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
EST: gi|23725468|gb|BU760689.1|BU760689
EST:     CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAG                         ATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
genomic: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaact ... gaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
EST: gi|213589752|gb|DB957601.1|DB957601
EST:     CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAG                         ATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
genomic: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaact ... gaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTGGCTGAGACTGCAGCTTCAATGGCAGTAGCTGTAACTGTTGTTGGTGCAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaacttatctttattgtttgtttcaataaaataactaattgtgcttacaagccaccttgtttttccaaacaagaacatgaaaatctttggaatgc

- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC