1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttgacaacttggtaattgcattctccaagttggtttatgctacccacttcgtttttaggaactgtttttctaaattaagctcttcttttgaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAATGCAAAGGTGAAGGATTCGTTCTTAGGAAACGTTCTGATGAAAGTGCTG
species | Glycine max |
transcript | GLYMA12G08390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAG ATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGGATATTGTTCTGAEST: gi|22522921|gb|BU081732.1|BU081732
genomic: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaact ... gaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATAT-GTTCTGA
EST: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAG ATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAAEST: gi|7795276|gb|AW780673.1|AW780673
genomic: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaact ... gaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
EST: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAG ATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAAEST: gi|23725468|gb|BU760689.1|BU760689
genomic: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaact ... gaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
EST: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAG ATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAAEST: gi|213589752|gb|DB957601.1|DB957601
genomic: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaact ... gaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
EST: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAG ATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
genomic: CAGCAGCTACTCTTCTTGTAAAGAGATCCAAAACTTCTGAGTCAACACAGgtcagtaact ... gaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAA
cacttcgtttttaggaactgtttttctaaattaagctcttcttttgaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAATGCAAAGGTGAAGGATTCGTTCTTAGGAAACGTTCTGATGAAAGTGCTG
ttctaaa putative branch site (score: 2)
ctcttcttttg putative PPT
tgtttttctaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgacaacttggtaattgcattctccaagttggtttatgctacccacttcgtttttaggaactgtttttctaaattaagctcttcttttgaaattaaagATTCAATTCAAAGTATGTGAAGATTGTGGAGGTTCTGGTATATGTTCTGAATGCAAAGGTGAAGGATTCGTTCTTAGGAAACGTTCTGATGAAAGTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
cttgaca
- - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - tttatgc