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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCGGGAAAGGAAAGAGTCTGTGACAGTGTTATTGTGTGGCACTAGTGGCTGTGGCAAATCCACTTTGTCTGCATTGCTGgtatcttgacaaagagaatcagttgtttgtttttcaaatgcaaaaaatctaggtttttacttatttggtggtaggatatacatgtgagaaagttgaaaatgagcaatattaataccttacagtttgataaccatcatttatgtcttcacttcag

Basic information

species Glycine max
transcript GLYMA12G08340.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08340.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0061g00280.t01 (Vitis vinifera), 5'ss of exon 4
GATCCGGGAAAGGAAAGAGTCTGTGACAGTGTTATTGTGTGGCACTAGTGGCTGTGGCAAATCCACTTTGTCTGCATTGCTGgtatcttgacaaagagaatcagttgtttgtttttcaaatgcaaaaaatctaggtttttacttatttggtggtaggatatacatgtgagaaagttgaaaatgagcaatattaataccttacagtttgataaccatcatttatgtcttcacttcag
 ||||| |||||||| || ||||| |||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||             | ||| |  ||| | ||  |||| |  |   |||   ||| | |  |  |   | ||   |||| ||     |    | ||  || |   |   | | |    || |                               
AATCCGAGAAAGGAAGGAATCTGTAACAGTGCTGTTGTGTGGCACTAGTGGCTGTGGCAAATCTACTTTGTCTGCATTACTGgta-------------attcattcttttttattagaaatactgatgttct---tttctgc--aacttaagatatattatatat-----agcactaaatgtgggttttgccattcctccccatt-------------------------------