1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtactggttaattcttatgttttgtgcagagactacatataacatcagaatttttccacaacattattctgactgtgtttttcattttcctcttatcagATCAGCCAAAGAGTGTTTGAACTCACAAGGAAAGAGAATTCTACTGATGTTTTGAAGCCGGAAGTAGAGGCCCTATCAGATTTTGATGTTTTCAAGAGGA
species | Glycine max |
transcript | GLYMA12G08340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tcagaatttttccacaacattattctgactgtgtttttcattttcctcttatcagATCAGCCAAAGAGTGTTTGAACTCACAAGGAAAGAGAATTCTACTGATGTTTTGAAGCCGGAAGTAGAGGCCCTATCAGATTTTGATGTTTTCAAGAGGA
ttctgac putative branch site (score: 2)
ctgtgtttttcatttt CT-rich tract
tttttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtactggttaattcttatgttttgtgcagagactacatataacatcagaatttttccacaacattattctgactgtgtttttcattttcctcttatcagATCAGCCAAAGAGTGTTTGAACTCACAAGGAAAGAGAATTCTACTGATGTTTTGAAGCCGGAAGTAGAGGCCCTATCAGATTTTGATGTTTTCAAGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- -actggtt
- - - - - - - - - - -tttgtgc
- - - - - - - - - - - - - - - -gactaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac