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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcatttaaatctagttccattttagttgatgttgccatgtcttacttttagttacaagtcatttgttgtattatgcagTGGTCAGTGTTACTTCCAGTAGTTTTGACTTTGGTAGCAACCTATAGCAGTGAAAAAGATAGCAAATATATAAAATTTCTATCTGACTTGTGCTACACCA

Basic information

species Glycine max
transcript GLYMA12G08290.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08290.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G60740.1 (Arabidopsis thaliana), 3'ss of exon 12
-----------gtgagcatt-taaatctagttccat-tttagttgatgttgccatgtcttacttttagttacaag-----------tcatttgttgtattatgcagTGGTCAGTGTTACTTCCAGTAGTTTTGACTTTGGTAGCAACCTATAGCAGTGAAAAAGATAGCAAATATATAAAATTTCTATCTGACTTGTGCTACACCA------
            | |    | |  ||  |     |   |  |   |    ||  ||| | |||| | |   |||            || |   ||   || ||||||||||||||||||||||||| ||| ||||| |  | || |||      |||  ||| || | ||||    || | |   | || || ||||||||||| |      
gtaagtgtctcatcaatgctgttgatagaaccaaagactcggactagaaagctctgtttcacttcttgacccaaaaaaacatctcttcctcattttctttgtgcagTGGTCAGTGTTACTTCCAGTGGTTCTGACTCTAATTGCCACC------AGTACAAACGACAACAAAATCGTAGATTCAATCTCAGAGTTGTGCTACACGAGATGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgatgttgccatgtcttacttttagttacaagtcatttgttgtattatgcagTGGTCAGTGTTACTTCCAGTAGTTTTGACTTTGGTAGCAACCTATAGCAGTGAAAAAGATAGCAAATATATAAAATTTCTATCTGACTTGTGCTACACCA
               gtcttac  putative branch site (score: 3)
                                     atttgttgtattat  TA-rich tract