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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTTCAAGTTGGCATCTTGTGAGCCTAAGTCATCAAATCAAAATATTACTGCATATGGTGTCTTGGTTTTTgtaagtaatatttaaacatttcattttaagaaacatttctcatatataagtcattgtgtagtgtgaaccatggtattgtttttagctctatttcaaaatg...

Basic information

species Glycine max
transcript GLYMA12G08290.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08290.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g02490.t01 (Vitis vinifera), 5'ss of exon 7
GTTGTTTCAAGTTGGCATCTTGTGAGCCTAAGTCATCAAATCAAAATATTACTGCATATGGTGTCTTGGTTTTTgtaagtaatatttaaacatttcattttaagaaacatttctcatatataagtcattgt-gtagtgtgaacc-atggtatt--gtttttagctctatttcaaaatg
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GGTGCTTCCGGATGACAACTTGTGATAAAAATTCAGCAAATCAAAATATCACTGCATATGGAGTCTTGCTTTTTgtgagtaatctgtttat-tttcaaaggacaagtatgatgataggtttaaaccttcatcacaatctgtatctatgggattatgtattttggccaattttgga---