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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacacattcacctttatgttatcattgctaattgcagtgtttctagtttaatcatgtttcttatttttcaaatatttgaagttttaatgcatatttttcgtttctgatcgttacatcagctgctatcatagatcattctcatgtagcatgaaaaacaaaccatatcctgatctttttcttgatggacatgtaaagGAACCAGAAGATGCACAAAAGCAAAGGCAAGCTCCACCTAGTAAATTTCCAACACATAGTTCAATGCCAATATATAATGATCACAATCTTTCTGTTGAGA

Basic information

species Glycine max
transcript GLYMA12G08210.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346106|gb|BM890986.1|BM890986
EST:     CCCCGGGAAAATCTAGGAGGAGAAGAAACATTCCAGCCAGCCTCTTTCAG                         GAACCAGAAGATGCACAAAAGCAAAGGCAAGCTCCACCTAGTAAATTTCCA
genomic: CCCCGGGAAAATCTAGGAGGAGAAGAAACATTCCAGCCAGCCTCTTTCAGgtaaacacat ... acatgtaaagGAACCAGAAGATGCACAAAAGCAAAGGCAAGCTCCACCTAGTAAATTTCCA
EST: gi|13791092|gb|BG653683.1|BG653683
EST:     CCCCGGGAAAATCTAGGAGGAGAAGAAACATTCCAGCCAGCCTCTTTCAG                         GAACCAGAAGATGCACAAAAGCAAAGGCAAGCTCCACCTAGTAAATTTCCA
genomic: CCCCGGGAAAATCTAGGAGGAGAAGAAACATTCCAGCCAGCCTCTTTCAGgtaaacacat ... acatgtaaagGAACCAGAAGATGCACAAAAGCAAAGGCAAGCTCCACCTAGTAAATTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtagcatgaaaaacaaaccatatcctgatctttttcttgatggacatgtaaagGAACCAGAAGATGCACAAAAGCAAAGGCAAGCTCCACCTAGTAAATTTCCAACACATAGTTCAATGCCAATATATAATGATCACAATCTTTCTGTTGAGA
          aaaaacaaa  TA-rich tract