1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtttatttcttaaggaaatagagttaatgattcataggtggtaattgtcacaagtcataaaatatacttccataaacttttcaagtattctacttgcagATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCAC
species | Glycine max |
transcript | GLYMA12G08210.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAA ATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCEST: gi|19452828|gb|BM954238.1|BM954238
genomic: GAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAAgtatgaatct ... ctacttgcagATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGC
EST: GAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAA ATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCEST: gi|9820273|gb|BE555783.1|BE555783
genomic: GAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAAgtatgaatct ... ctacttgcagATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGC
EST: AGATGTCANATCACCTAACATTCTTCTGGATGAAAATTGGGCA-GCAAAA ATAACTGATCTTGGCATG-CTAAAAAC
genomic: AGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGG-CAAGCAAAAgtatgaatct ... ctacttgcagATAACTGATCTTGGCATGGCTAAAAAC
ttgtcacaagtcataaaatatacttccataaacttttcaagtattctacttgcagATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCAC
ttctactt CT-rich tract
aagtcataaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttatttcttaaggaaatagagttaatgattcataggtggtaattgtcacaagtcataaaatatacttccataaacttttcaagtattctacttgcagATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - -ggtggta
- - - - - - - - - - - - - - - - - - - - - - - tgtcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttcca