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...tcttttgatattgtcttcgattttaatttatccaaaaaaagatatgcattcttcaattcattcattacaaattgatatgatttttgtttcattgttgtagGAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAACTGAGCAGATAGATTACTCCTCAAATTGTGGCATGTCTAGGTGATTAGATG
species | Glycine max |
transcript | GLYMA12G08150.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACATAATTGTATCTGCCCCATCAACAAAAGAGCTTGTCAAAAAGATGGAG GAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAACTEST: gi|192302004|gb|FG995174.1|FG995174
genomic: ACATAATTGTATCTGCCCCATCAACAAAAGAGCTTGTCAAAAAGATGGAGgtaattaatt ... attgttgtagGAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAACT
EST: ACATAATTGTATCTGCCCCATCAACAAAAGAGCTTGTCAAAAAGATGGAG GAATATTTTCCACAACATGAAAGAGTTGCCTTTAAGCTAAGCTGGGAAACTEST: gi|209729400|gb|BW663675.1|BW663675
genomic: ACATAATTGTATCTGCCCCATCAACAAAAGAGCTTGTCAAAAAGATGGAGgtaattaatt ... attgttgtagGAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAACT
EST: ACATAATTGTATCTGCCCCATCAACAAAAGAGCTTGTCAAAAAGATGGAG GAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAACTEST: gi|214004474|gb|DB984822.1|DB984822
genomic: ACATAATTGTATCTGCCCCATCAACAAAAGAGCTTGTCAAAAAGATGGAGgtaattaatt ... attgttgtagGAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAACT
EST: ACATAATTGTACCTGCCCCATCAACAAAAGAGCTTGTCAAAAAGATGGAG GAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAACT
genomic: ACATAATTGTATCTGCCCCATCAACAAAAGAGCTTGTCAAAAAGATGGAGgtaattaatt ... attgttgtagGAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAACT
gcattcttcaattcattcattacaaattgatatgatttttgtttcattgttgtagGAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAACTGAGCAGATAGATTACTCCTCAAATTGTGGCATGTCTAGGTGATTAGATG
aattgat putative branch site (score: 4)
tttcatt putative PPT
attacaaattgatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttgatattgtcttcgattttaatttatccaaaaaaagatatgcattcttcaattcattcattacaaattgatatgatttttgtttcattgttgtagGAATATTTTCCACAACATGAAAGAGTTGCCTCTAAGCTAAGCTGGGAAACTGAGCAGATAGATTACTCCTCAAATTGTGGCATGTCTAGGTGATTAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatatg