1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagcataatcttaatactacttccttgtgatttactatttgtgttgttgaattataggatatgatgctaattttcaattatattcttgtcatgatattgtctgcagAGTTATTCCCAAGACACTGATGCCAAGAGAG
species | Glycine max |
transcript | GLYMA12G08150.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGGGGTTGGTTTCCCAGGCTGTTTATGAAGGAGGTCGCCATGTAATTGG AGTTATTCCCAAGACACTGATGCCAAGAGAGEST: gi|192302004|gb|FG995174.1|FG995174
genomic: ATGGGGTTGGTTTCCCAGGCTGTTTATGAAGGAGGTCGCCATGTAATTGGgtgagcataa ... ttgtctgcagAGTTATTCCCAAGACACTGATGCCAAGAGAG
EST: ATGGGGTTGGTTTCCCAGGCTGTTTATGAAGGAGGTCGCCATGTAATTGG AGTTATTCCCAAGACACTGATGCCAAGAGAGEST: gi|209729400|gb|BW663675.1|BW663675
genomic: ATGGGGTTGGTTTCCCAGGCTGTTTATGAAGGAGGTCGCCATGTAATTGGgtgagcataa ... ttgtctgcagAGTTATTCCCAAGACACTGATGCCAAGAGAG
EST: CTGTTTATGAAGGAGGTCGCCATGTAATTGG AGTTATTCCCAAGACACTGATGCCAAGAGAG
genomic: CTGTTTATGAAGGAGGTCGCCATGTAATTGGgtgagcataa ... ttgtctgcagAGTTATTCCCAAGACACTGATGCCAAGAGAG
ttataggatatgatgctaattttcaattatattcttgtcatgatattgtctgcagAGTTATTCCCAAGACACTGATGCCAAGAGAG
tgctaat putative branch site (score: 2)
taattttcaattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcataatcttaatactacttccttgtgatttactatttgtgttgttgaattataggatatgatgctaattttcaattatattcttgtcatgatattgtctgcagAGTTATTCCCAAGACACTGATGCCAAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA