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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtaacttttggctttattcttttcaaatttccccttttgtttatgaaatagcacgaatgctacgacattacataaaatgtttgtctcattttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGCTATTACTGATGTATATGCCCTTTTAGTAAGGCGTTCTTTGCAGAACTAT

Basic information

species Glycine max
transcript GLYMA12G08090.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207828708|gb|GD798425.1|GD798425
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTG
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTG
EST: gi|58018228|gb|CX704970.1|CX704970
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|17021342|gb|BM092376.1|BM092376
EST:     ACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: ACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|193345797|gb|FK311318.1|FK311318
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|193527920|gb|FK483422.1|FK483422
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|193362435|gb|FK325301.1|FK325301
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|151404656|gb|EV274470.1|EV274470
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCTTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
EST: gi|208086022|gb|GD885062.1|GD885062
EST:     CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTG                         TTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC
genomic: CTATCCATCATGGCATCCACTAGTGATTTCCCTTCTGTCACTGCTTTCTGgtaatcactt ... tttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatagcacgaatgctacgacattacataaaatgtttgtctcattttttatcagTTACCTTGTTGCTGCTGCTGGCTTGCAGGCTATGTGGAGCTTTTCATTGGCTATTACTGATGTATATGCCCTTTTAGTAAGGCGTTCTTTGCAGAACTAT
                                   tttgtctcatttttt  CT-rich tract
                      attacataaaatgttt  TA-rich tract