1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggttagatctaatattcaatatttatctcttttattgtctcataaaaaagaccgtctctctctaattctctcatgttttttgaactaaaaatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCATCCATGTCGACATGGAGCAGTGATGAAGAAAATCATTGATGTGTTGATGT
species | Glycine max |
transcript | GLYMA12G00830.5 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACG GTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCATEST: gi|207721023|gb|GD702724.1|GD702724
genomic: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACGgtgagatatg ... aatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCAT
EST: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACG GTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCATEST: gi|193369407|gb|FK336669.1|FK336669
genomic: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACGgtgagatatg ... aatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCAT
EST: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAGACG GTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCATEST: gi|192330861|gb|FK021620.1|FK021620
genomic: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACGgtgagatatg ... aatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCAT
EST: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACG GTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCATEST: gi|193463512|gb|FK427436.1|FK427436
genomic: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACGgtgagatatg ... aatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCAT
EST: AACCAGAACTTGTTCTTGAAGTTGTTAGTCAAGACCATGCACGCAAAACG GTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCGTGCATCTATTCATEST: gi|9820599|gb|BE556109.1|BE556109
genomic: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACGgtgagatatg ... aatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCAT
EST: ACCCCGANCTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAANCG GT-ACNNATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCAEST: gi|19346154|gb|BM891034.1|BM891034
genomic: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACGgtgagatatg ... aatgttgcagGTAAC-AATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCA
EST: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACG GTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCATEST: gi|21887729|gb|BQ740942.1|BQ740942
genomic: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACGgtgagatatg ... aatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCAT
EST: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACG GTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCATEST: gi|31468734|gb|CD410762.1|CD410762
genomic: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACGgtgagatatg ... aatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCAT
EST: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCTAAACG GTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCAT
genomic: AACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACGgtgagatatg ... aatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCAT
aaaaagaccgtctctctctaattctctcatgttttttgaactaaaaatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCATCCATGTCGACATGGAGCAGTGATGAAGAAAATCATTGATGTGTTGATGT
aactaaa putative branch site (score: 2)
ttttttgaactaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttagatctaatattcaatatttatctcttttattgtctcataaaaaagaccgtctctctctaattctctcatgttttttgaactaaaaatgttgcagGTAACAATTGAGGACCATCCTCACTTGCCAGGGAAGCATGCATCTATTCATCCATGTCGACATGGAGCAGTGATGAAGAAAATCATTGATGTGTTGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA