1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attatattctcatttaaccctttcatcatttccaaatttcaattctatactttgcagacttgttactgatttagtgattccatgttcaatcttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACG
species | Glycine max |
transcript | GLYMA12G00830.5 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGATAAATATTATCNAACACCACGAGTATGGCTTACTGGGTATGACGAG TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACEST: gi|207721023|gb|GD702724.1|GD702724
genomic: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: TAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAG TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACEST: gi|193369407|gb|FK336669.1|FK336669
genomic: TAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: ATATTATCAAACACCACGAGTATAGCTTACTGGGTATGACGAG TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACEST: gi|192330861|gb|FK021620.1|FK021620
genomic: ATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAG TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACEST: gi|193463512|gb|FK427436.1|FK427436
genomic: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAG TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGTTGTTAGTCAAGACEST: gi|9820599|gb|BE556109.1|BE556109
genomic: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: TATCAACCACCACGAGTATGGCTTACTGGGTATGACGAG TCAAGAATGCTTTTGCACCCCGANCTTGTTCTTGAAGATGTTAGTCAAGACEST: gi|19346154|gb|BM891034.1|BM891034
genomic: TATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAG TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACEST: gi|21887729|gb|BQ740942.1|BQ740942
genomic: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAG TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
genomic: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
tatactttgcagacttgttactgatttagtgattccatgttcaatcttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACG
tactgat putative branch site (score: 2)
tgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatattctcatttaaccctttcatcatttccaaatttcaattctatactttgcagacttgttactgatttagtgattccatgttcaatcttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG