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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctagaatttagatagtttgtgcttgtaaacctgttatatgattcgggtttggtatttatacatgtgatgttattttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG

Basic information

species Glycine max
transcript GLYMA10G24590.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G24590.3 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 4
----------------------------gtatg-tctagaatttagatagtttgtgcttgtaaacctgttatatgattcgggtttggtatttatacat---gtgatgttattttcatc-cagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG
                            | ||| |    ||| |  | |    |  | | |   |  ||      |    |    | || | || |||    ||||| | || |  |  ||||||| || |||||||| || || ||  | || |||||||||||||| ||||| || |||||||| || |||||||||| |||||| | ||||||||| |
gtaactgataactgttgtttacgatcatgcatgctacctaatatgaagaagacgatcctatcttctggtggacaaaaaaagaagagataatgatgcatcccatgatgatgttgttgttgcagAAACCGTCCCTGTTAGAACTGTCAACCGCCAGTGTTCATCTGGGCTACAGGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG

upper sequence: GLYMA10G24590.3 (Glycine max), 3'ss of exon 4
lower sequence: AT2G33150.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtctagaatttagatagtttgtgcttgtaaacctgttatatgattcgggtttggtatt---tatacatgtgatgttattttcatc--cagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG
|||||| |    | |  | |||         || |   || | | |  |  | |||  | |    ||| |   |  |||||| |||||   ||||||| ||| |||| || || || ||||| || || ||||||||||| |||||||| ||||||||||| ||||| || |  || || || ||||||||||
gtatgtttcttctatgtacagtaca-----atacaatggtgaaaagtctttgtttttatttcctgtatgctcatcctgttatgttcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAGCCGCTGCCATTAAAGCGGGATTTTATGACATTG

upper sequence: GLYMA10G24590.3 (Glycine max), 3'ss of exon 4
lower sequence: AT1G04710.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtctagaatttagatagtttgtgcttgtaaacctgttatatgattcgggtttggtatttatacatg-tgatgttattttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG
|||    |    | |  ||  |  ||  |  | || || || | |  ||   ||||| | | |    ||| |  | || | |      ||||||||| ||  | || ||||| || || || |||||||||||||| |||||||| |||||||| || ||||| ||||  ||||| || ||||||||||
gtaatattttcttctgtattatg-gtaatcctgaatcttttct-tctttttcgtttgttgtatgcttatgctctttttgtctgttggaagAAACTGTTCCCATCAGAACCGTGAACAGACAGTGTTCATCTGGGCTTCAGGCTGTTGCTGATGTTGCCGCTGCCATAAAAGCTGGTTTTTATGACATTG

upper sequence: GLYMA10G24590.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0051g00720.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtctagaatttagatagtttgtgcttgtaaacctgttatatgattcgggtttggtatttatacatgtgatgttattttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG
|||| | |     ||  |   |      || ||    || | | ||   |   ||   | || | | || | || |  | |   | |||||||||||||||| || || || || ||||||||||||||||| || ||||| || ||||||||||||||||| || |  |||||||| ||||||||||
gtatattt---ccttgaactatcc---tttatatttttggt-tttgtacccatttcattgttcacaaatattatatc-tgtgatttcagAAACTGTGCCTGTCAGAACTGTGAACAGGCAATGTTCATCTGGTCTTCAGGCAGTTGCTGATGTAGCTGCTGCAATTAAAGCTGGGTTTTATGACATTG

upper sequence: GLYMA10G24590.3 (Glycine max), 3'ss of exon 4
lower sequence: PP1S55_275V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------------------------------------------------------------------------------------------gtatgtctagaatttagatagtttgtgcttgtaaacctgttatatg-attcgggtttggtatttatacatgtgatgttatttt-catc--cagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG-
                                                                                                              ||||||||   ||||  | |||| |     |     | | |  |  |||  | |||||  | |  | | ||  |    | |  |  |  ||||||||||||| ||||| || || || |||||||| |||||||| || || ||||| || |||||||| || ||||| |  || || |||||||| |||| 
gtgagcttatagctatgtttcttatggccatatatgtaatgccgctcaggaagatagttgtctttttcatgggagtgtttaatgcgcaggtgactaataatttagggaaatatgtcta--ttttatgttgtttattgaaatgcctttatgaactccattgagatttggcttctg-ataagttcttccgtgtggcggcaacagAAACTGTGCCCGTTAGAACTGTGAACAGGCAATGCTCATCTGGACTGCAAGCTGTTGCGGATGTAGCGGCAGCTATTAAAGCAGGTTTCTATGATATTGG

upper sequence: GLYMA10G24590.3 (Glycine max), 3'ss of exon 4
lower sequence: EFJ35624 (Selaginella moellendorffii), 3'ss of exon 4
gtatgtctagaatttagatagtttgtgcttgtaaacc-tgttatatgattcgggtttggtatttatacatgtgatgttattttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG
            |||  ||  ||| |  ||||   |  | | |  || ||    ||    ||| | ||      | |||| |      |||||||||||||||| | ||||| || ||||||||||| ||||| ||||| || || |||||||| |  |||||||| | ||| || |||||||| ||||
-----------gttt--atgatttttctttgttttctatataacttgtttttctttcaccattgagactaac--ttttatgtcttggtagAAACTGTGCCTGTTCGTACCGTGAACAGGCAATGTTCTTCTGGCCTCCAAGCAGTAGCTGATGTTGTGGCTGCTATCAAGGCCGGATTCTATGATATTG

upper sequence: GLYMA10G24590.3 (Glycine max), 3'ss of exon 4
lower sequence: EFJ24355 (Selaginella moellendorffii), 3'ss of exon 4
gtatgtctagaatttagatagtttgtgcttgtaaacctgttatatgattcgggtttggtatttatacatgtgatgttattttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG
    || ||  ||||      | | ||||| | |   | | |  || ||    ||    ||| | ||      | |||| |      |||||||||||| ||| | ||||| || || |||||||| ||||| ||||| || || |||||||| |  |||||||| | ||| || |||||||| ||||
----gtttatgatttt-----tctttgcttttta---tataagttgtttttctttcaccattgagactaac--ttttatgtcttggtagAAACTGTGCCAGTTCGTACCGTGAACAGACAATGTTCTTCTGGCCTCCAAGCAGTAGCTGATGTTGTGGCTGCTATCAAGGCCGGATTCTATGATATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346509|gb|GR856231.1|GR856231
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|27809192|gb|CB063614.1|CB063614
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGNTTTCCCG                         AAACTGTGCCTGTT
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTT
EST: gi|14205951|gb|BG839629.1|BG839629
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|8284713|gb|BE022255.1|BE022255
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|120495133|gb|EH223300.1|EH223300
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|15813513|gb|BI785788.1|BI785788
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|7692636|gb|AW760738.1|AW760738
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|10709746|gb|BF009470.1|BF009470
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|24205254|gb|BU964507.1|BU964507
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTT
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTT
EST: gi|7693433|gb|AW761525.1|AW761525
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|7691642|gb|AW759765.1|AW759765
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|37996297|gb|CF807886.1|CF807886
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|254317034|gb|GR828571.1|GR828571
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|6482895|gb|AW202105.1|AW202105
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|13787250|gb|BG649842.1|BG649842
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTANGACCGTT
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTT
EST: gi|254333126|gb|GR850376.1|GR850376
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|213614820|gb|DB956956.1|DB956956
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|192298166|gb|FG992031.1|FG992031
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|26268999|gb|CA820062.1|CA820062
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|42722592|gb|CK768491.1|CK768491
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGAAATGTTCATCTG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTG
EST: gi|18041099|gb|BM309393.1|BM309393
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|254331508|gb|GR843465.1|GR843465
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|209726647|gb|BW666565.1|BW666565
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|209698441|gb|BW667238.1|BW667238
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCGG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|15202571|gb|BI425470.1|BI425470
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|120529986|gb|EH258120.1|EH258120
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCACG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|7692466|gb|AW760572.1|AW760572
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|120534371|gb|EH262504.1|EH262504
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|209725233|gb|BW672708.1|BW672708
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
EST: gi|31561013|gb|CD486851.1|CD486851
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGAC
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGAC
EST: gi|192325989|gb|FK016186.1|FK016186
EST:     TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCG                         AAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG
genomic: TCAAAGAGCTAGTGAATGCCGAATGGCTGCATTTTATGCTGGTTTTCCCGgtatgtctag ... tttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctgttatatgattcgggtttggtatttatacatgtgatgttattttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG
                                            ttttcatcc  CT-rich tract
                        tatttatacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtctagaatttagatagtttgtgcttgtaaacctgttatatgattcgggtttggtatttatacatgtgatgttattttcatccagAAACTGTGCCTGTTAGGACCGTTAATAGGCAATGTTCATCTGGGCTCCAGGCTGTCGCTGATGTAGCTGCTGCTATAAGGGCTGGGTTCTATGACATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT