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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTGCAGAGGCAGACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacacaatacttcatatttgcaaaacagtatatgggttcccttcatcttttgtcttctaaagttacttctctttaagacattctgtgccatgtag...

Basic information

species Glycine max
transcript GLYMA09G13840.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g64650.2 (Oryza sativa), 5'ss of exon 4
GATCCTGCAGAGGCAGACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacacaatacttcatatttgcaaaacagtatatgggttcccttcatcttt-tgtcttctaaagttacttctctttaagacattctgtgccatgtag
|| ||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| ||||| |     |||   | |     |  | || |||    | || ||||| ||  |   | | ||   | ||| | | ||| | | ||  || |  |   
GACCCTGCAGAGGCTGACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtatttcttaccagaaaaaaaaattatagaatagctctgccattcatattggtaaataccaacacttcttgt-tctaacaaactcaatgacccgatc

upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g73300.1 (Oryza sativa), 5'ss of exon 4
GATCCTGCAGAGGCAGACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaag-aacacaatacttcat--atttgcaaaacagtatatgggttcccttcatcttttgtcttctaaagttacttctctttaagacattctgtgccatgtag
|||||||||||||| ||||||||| ||||||| ||||| || ||||||||||| || || || |||||||| ||| | ||   ||||  |||   | | |   ||     ||     | | |  || |      |  | | |   || |         |   ||||   
GATCCTGCAGAGGCTGACAAGTTGCTGAAAATTCAGAGGGATTTGGATGAAACTAAGATTATTCTTgtaagtaactctatcgctcatgaattaatatatcctgattgcaatttataccctatgctggcaatggcatattccttatttcagtgtgcatggattcatg---

upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G387076_T02 (Zea mays), 5'ss of exon 5
GATCCTGCAGAGGCAGACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacacaatacttcatatttgcaaaacagtatatgggttccctt-catcttttgtcttctaaagttacttctctttaa--gacattctgtgccatgtag
|||||||| || || ||||| || |||||||| ||||| || ||||||||||| ||||| ||||| |||||       || || |   ||  |   |  || ||   |    || ||   | ||| |  |  | | | | || ||  |   |  |||  ||| ||    
GATCCTGCGGAAGCTGACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtgtgatgtatttaaatcttttattgct-tacatatttcagtttacagaatatgtatcatgcattaagtactgttggattaatgttcattgctataa--

upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G58060.2 (Arabidopsis thaliana), 5'ss of exon 5
GATCCTGCAGAGGCAGACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacacaatac--ttcatatttgcaaaacagtatatgggttcccttcatcttttgtct--tctaaagttacttctctttaagacattctgtgccatgtag
|| || |||||||| || ||| || ||||||||||||| ||||||||||| || || || |||||||||||  |    | |  | | |  ||| | | |  ||||      |  | | || |||      | | |   |||||  |  | | ||||    |||  |    
GACCCAGCAGAGGCTGATAAGCTGTTGAAAATCCAGAGGGAGTTGGATGAGACAAAGATTATCCTTgtaagtgctgtctccggtcctttcttgtagacccttatacataagcggtacttccttttctaagtttcagtatacttgccaattatacataa-atgctgtt---

upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G58180.1 (Arabidopsis thaliana), 5'ss of exon 4
GATCCTGCAGAGGCAGACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaaca--caatacttcatatttgcaaaacagtata---tgggttcccttcatcttttgtcttctaaagttacttctctttaagacattctgtgccatgtag--------------------------------------------
|| || ||||| || || ||| || ||||||||||||| || |||||||| ||||| || |||||||||||  |   |  |  ||| |  |||   | | | ||    ||  | |  || |  ||        ||    | |    | |||||   || | | | | || |                                            
GACCCGGCAGAAGCTGATAAGCTGTTGAAAATCCAGAGGGAATTGGATGAGACCAAGATTATCCTTgtaagtgccgtccctggttcttgattgttgacctgcatgctttgcttcctttttacattccaatacataccagttccctccattaagttcttgtttccaaggtcgcttaaacatggtcgttttatgctgacttttgttttatactacag

upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0206g00130.t01 (Vitis vinifera), 5'ss of exon 4
GATCCTGCAGAGGCAGACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacacaatacttcatatttgcaaaaca----gtatatgggttcccttcatct---tttgtcttctaaagttacttctctttaagacattctgtgccatgtag
|||||||| ||||| || |||||| ||||||| |||||||||||||||||||| ||||| || ||||| ||       || || | | |||||  |      |||||| | | |  |  || |   |   |  |||     |     ||||||  |  |  | | || |||  
GATCCTGCGGAGGCTGATAAGTTGTTGAAAATTCAGAGAGAGTTGGATGAAACTAAAATTATTCTTgtgagttt----taatttacaattgcattattttatgtatatagatccagtatatataaatagattgtctttctctttccttctttatcagttcatatacc-tgt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197641|gb|HO045120.1|HO045120
EST:     ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTT                         CATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTA
genomic: ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacac ... ttataaacagCATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTA
EST: gi|192313879|gb|FK011083.1|FK011083
EST:     ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTT                         CATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTA
genomic: ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacac ... ttataaacagCATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTA
EST: gi|298168934|gb|HO009864.1|HO009864
EST:     ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTT                         CATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGAT
genomic: ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacac ... ttataaacagCATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGAT
EST: gi|298164125|gb|HO013770.1|HO013770
EST:     ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTT                         CATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGAT
genomic: ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacac ... ttataaacagCATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGAT
EST: gi|298163467|gb|HO012200.1|HO012200
EST:     ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTT                         CATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTA
genomic: ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacac ... ttataaacagCATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTA
EST: gi|192333542|gb|FK025737.1|FK025737
EST:     ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTT                         CATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTA
genomic: ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacac ... ttataaacagCATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTA
EST: gi|31469010|gb|CD411038.1|CD411038
EST:     ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTT                         CATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTA
genomic: ACAAGTTGATGAAAATCCAGAGAGAGTTGGATGAAACCAAAATCATCCTTgtaagaacac ... ttataaacagCATAAAACTATTGATAGTGTGCTAGCTAGAGGGGAGAAGCTGGATAGTTTA