Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactcagataaccgtttattggttcagtgctatattgtatatttgtattcatggaattttgttgcttcctttgtgtctataaggaacttttttcat...

Basic information

species Glycine max
transcript GLYMA09G13840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g64650.1 (Oryza sativa), 5'ss of exon 2
AGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactcagataaccgtttattggttcagtgctatattgtatatttgtattcatggaattttgttgcttcctttgtgtctataaggaacttttttcat----------
| |||||||| ||| || ||||||||||||||||||||||  | | ||||||||||||||| || ||  | || ||||| ||||||||||| ||| ||||  ||  |          || |||   || | || ||||| ||||   | |   ||   |    |    | |       | |||||| | | | | | |          
AATACAAGGTCCACTCACACAACAGGAATGGTCTTTGCGCAGTTGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAGgtatgagcc------tttgttcttga--cattcctgtattgcatatccttgtatttgacctaggatcagattcacaag--caataagggattgtctccttgctattctca

upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G387076_T02 (Zea mays), 5'ss of exon 3
AGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactcagataaccgtttattggttcagtgctatattgtatatttgtattcatggaattttgttgcttcctttgtgtctataaggaacttttttcat----
| |||||||| ||| |  |||| || ||||| ||||| ||| | | ||| |||||||||||||| ||| | |||||||| ||||||||||| ||||||||   | ||   | | |   ||  |  ||     |   || |   ||||  || |    |  ||     ||      |||    |   |  |||  |  |    
AATACAAGGTCCACTCCCACAATAGAAATGGGCTTTGTGCGGTTGCATTCATGGATGATCATTATCCGGTACGGAGTGCATTTTCTCTTCTGAATCAGgtaccaatcg--ttatccccta--gactcccacttgccttttgcttttggtttaagcccaggttaccaattgtaagctgtagccagtcacttttcattctgttc

upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G178244_T01 (Zea mays), 5'ss of exon 2
AGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtga-gactcagataaccg----tttattggttcagtgctatattgtatatttgtattcatggaattttgttgcttcctttgtgtctataaggaacttttttcat
| || ||||| ||| |  ||||||| ||||| ||||| ||| ||| ||||||||||||||| || ||  | || ||||| ||||||||||| ||||||||   |||   |||  | |    |        ||  |||| |    |  | |||  || |   | | |   |  |  |      | | | |   | || |     
AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgaccatgattcctgagattcccacatgtctttgcttttggttgaagttgagtttaccaattgtaagttgtagccagtcatttctcacccagttct-----

upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G58060.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactcagataaccgtttattggttcagtgctatattgtatatttgtattcatggaattttgttgcttcctttgtgtctataaggaacttttttcat
|||||||||| ||| | ||||| || ||||| ||||||||| |||| || ||||| |||||||||||  |||| ||||| || ||||||||||||||||| | |     ||        | ||||||     |  ||  |   |  || ||| || ||||| |    || |||    | ||     |  || | ||| 
AGTACAAGGTTCACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGTTTCATGGACGATCATTACCCTGTTCGAAGTGCTTTCTCTCTTCTCAATCAGgtaatatcattatgttgaa--agtggttct-caatgcatcattcgtaagttttcctgtaatttgg---gttgcttgacattta-----attttgtctcag

upper sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G58060.2 (Arabidopsis thaliana), 5'ss of exon 3
AGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactcagataaccgtttattggttcagtgctatattgtatatttgtattcatggaattttgttgcttcctttgtgtctataaggaacttttttcat
        || ||| | ||||| || ||||| ||||||||| |||| || ||||| |||||||||||  |||| ||||| || ||||||||||||||||| | |     ||        | ||||||     |  ||  |   |  || ||| || ||||| |    || |||    | ||     |  || | ||| 
--------GTTCACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGTTTCATGGACGATCATTACCCTGTTCGAAGTGCTTTCTCTCTTCTCAATCAGgtaatatcattatgttgaa--agtggttct-caatgcatcattcgtaagttttcctgtaatttgg---gttgcttgacattta-----attttgtctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197641|gb|HO045120.1|HO045120
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|192313879|gb|FK011083.1|FK011083
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|298168934|gb|HO009864.1|HO009864
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|298164125|gb|HO013770.1|HO013770
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGGGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|298163467|gb|HO012200.1|HO012200
EST:     TTATGGATGATCATTACCCGATTCGGGGTGCGTTTTCTCTTCTCAATCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|192333542|gb|FK025737.1|FK025737
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAG                         GTAATAGATGAATGTCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|31469010|gb|CD411038.1|CD411038
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAG                         GTAATAGATGAATATCNNNNNNNCTTNGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|298172019|gb|HO021611.1|HO021611
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG