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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCGGATGCAGGGTTCCACTGCTTTGCACCTGACTGGATAGGATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataatcaaaacatcttatatcttgaagattttttcttgcagaaaccccatacagtcatactcatatgcttttctttcatttctcatag

Basic information

species Glycine max
transcript GLYMA08G22840.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22840.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os04g55180.2 (Oryza sativa), 5'ss of exon 4
TTGTCGGATGCAGGGTTCCACTGCTTTGCACCTGACTGGATAGGATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataatcaaaacatcttatatcttgaagattttttcttgcagaaaccccataca-gtcatactcatatgcttttctttcatttctcatag
 || | ||||| || | |||||||||||| ||||| |||||||||||||| |||||||| |  |||||||| |||||||| ||  | ||||||||| |     |     ||  |  |  |   |  | |   |||| |  ||  | |||  |  |  || |||| |||                    
ATGGCAGATGCTGGCTACCACTGCTTTGCTCCTGATTGGATAGGATTTGGGTTCAGTGATATGCCACAGCCCGGATATGGATTCGACTACACAGgtgtggccgt-gtggcaaatgttgacaaaattaatgaatcttactaaactctcatttatattgta-tcatgtgcag------------------

upper sequence: GLYMA08G22840.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G117531_T04 (Zea mays), 5'ss of exon 4
TTGTCGGATGCAGGGTTCCACTGCTTTGCACCTGACTGGATAGGATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataatca---aaacatcttatatcttgaa-gattttttcttgcagaaaccccatacagtcatactcatatgcttttctttcatttctcatag---
 || | ||||| || | |||||||||||||||||||||||| |||||||| |||||||| |  ||||| || |||||||| ||  | |  | ||||     ||      |   | || || ||  |   |  |   |      |||  ||  |  | | ||| | || |     | | ||| ||    ||    
ATGGCAGATGCTGGCTACCACTGCTTTGCACCTGACTGGATCGGATTTGGGTTCAGTGAAATGCCACAACCTGGATATGGATTCGACTTTAAAGgtcaggaaaatgtgtattaaactaatgtcccgtttggatcactagaattgaattccattctaataatagtaatttaggcatatatcaattaagctaattc

upper sequence: GLYMA08G22840.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G52510.2 (Arabidopsis thaliana), 5'ss of exon 4
TTGTCGGATGCAGGGTTCCACTGCTTTGCACCTGACTGGATAGGATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataatcaaaacatcttatatcttgaagattttttcttgcagaaaccccatacagtcatactcata-tgcttttctttcatttctcatag
||||| ||||| || || || |||||||||||||||||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||||   | ||    |||| | |||  |||   | |       ||| || |    ||||    |  |  |  |  |    ||| | |  ||  ||
TTGTCAGATGCTGGATTTCATTGCTTTGCACCTGACTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGgttcgttgat-ggtacatttaatagtttgtgaact-------gcaaaatcagtgtacatggttctttgttctaataagttttaaatcttctcag

upper sequence: GLYMA08G22840.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0002g07500.t01 (Vitis vinifera), 5'ss of exon 4
TTGTCGGATGCAGGGTTCCACTGCTTTGCACCTGACTGGATAGGATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataatcaaaacatcttatatcttgaagattttttc--ttgcagaaacccc----atacag---tcatactcatatgcttttctttcatttct-catag-
 |||| ||||  ||||| ||||| ||||||||||| |||||||| |||||||||||||| || ||| |  |||||||||| ||| | ||||||||| |  || |    | ||  || ||||| |  || || ||  ||| |  |         ||| |    |||   | ||    |||||| |  || ||  ||   
ATGTCAGATGTTGGGTTTCACTGTTTTGCACCTGATTGGATAGGCTTTGGTTTCAGTGAGAAGCCATATTCAGGATATGGATTTGACTACACAGgtcttttatttttcatatagta-atcttaattatgttatcagttgtattattttttgttatataacgctcaactttatgaagttttctcttcttactgtatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491597|gb|EH219764.1|EH219764
EST:     ATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAG                         AAAAGGAGTTCCATGATGCATTGGATAAGCTGCTTGAGGTGCTGGGGGTCA
genomic: ATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataat ... tttctcatagAAAAGGAGTTCCATGATGCATTGGATAAGCTGCTTGAGGTGCTGGGGGTCA
EST: gi|9258501|gb|BE346648.1|BE346648
EST:     ATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTTATTACACAG                         AAAATGAGTTCCATGATGCATTGGATTAGCTGCTTGAGGTGCCTGGGG-TC
genomic: ATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataat ... tttctcatagAAAAGGAGTTCCATGATGCATTGGATAAGCTGCTTGAGGTGC-TGGGGGTC
EST: gi|22540488|gb|BU090331.1|BU090331
EST:     ATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAG                         AAAAGGAGTTCCATGATGCATTGGATAAGCTGCTTGAGGTGCTGGGGGTCA
genomic: ATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataat ... tttctcatagAAAAGGAGTTCCATGATGCATTGGATAAGCTGCTTGAGGTGCTGGGGGTCA
EST: gi|120491643|gb|EH219810.1|EH219810
EST:     ATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAG                         AAAAGGAGTTCCATGATGCATTGGATAAGCTGCTTGAGGTGCTGGGGGTCA
genomic: ATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataat ... tttctcatagAAAAGGAGTTCCATGATGCATTGGATAAGCTGCTTGAGGTGCTGGGGGTCA
EST: gi|151402689|gb|EV272502.1|EV272502
EST:     ATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAG                         AAAAGGAGTTCCATGATGCATTGGATAAGCTGCTTGAGGTGCTGGGGGTCA
genomic: ATTTGGTTTCAGTGACAAACCACAGCCAGGATATGGTTTTAATTACACAGgtttcataat ... tttctcatagAAAAGGAGTTCCATGATGCATTGGATAAGCTGCTTGAGGTGCTGGGGGTCA