Sequence
atgc intronic sequence ATGC exonic sequenceACTTGCCCCAGTCTGTAGCAGAGCAGTTTCAGAAAGGAAATCCAGCACAAATCCAGCTTAAATTGATTGAAGGAGCTGGTCATATGCCACAAGAGGACTGgtaagtaactttagttaacataggattccagtgaataataaaatgttttcttcaacctcttaagaatataccctttgtattttttacag
Basic information
species | Glycine max |
transcript | GLYMA08G22840.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22840.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g55180.1 (Oryza sativa), 5'ss of exon 10
ACTTGCCCCAGTCTGTAGCAGAGCAGTTTCAGAAAGGAAATCCAGCACAAATCCAGCTTAAATTGATTGAAGGAGCTGGTCATATGCCACAAGAGGACTGgtaagtaacttta-gttaacataggattc---------cagtgaataataaaatgttttctt-caacctcttaagaatatacc--cttt---gtattttttacag--------------------------------------------------------------------
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ACTTGCCACTCCCCATAGCTGAGGAGTTCCAGAAAGGTAATCCTGCAGCCATAAAATTGGAGCCAATAGAAGGAGCTGGTCATATGCCTCAAGAGGACTGgtaattgtttttttactagctcagtattttctgtcgatctgtgtcctgtaaaatttgtactcatagttccatcggtgcttgcctgctttgacgtgtaaccttcaacctttaccttttggccaattcatatacttgtgcgatccttaacgcatctcacttgtcatgttatgcag
upper sequence: GLYMA08G22840.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G117531_T04 (Zea mays), 5'ss of exon 10
ACTTGCCCCAGTCTGTAGCAGAGCAGTTTCAGAAAGGAAATCCAGCACAAATCCAGCTTAAATTGATTGAAGGAGCTGGTCATATGCCACAAGAGGACTGgtaagtaactttagttaacataggattccagtgaataataaaatgttttcttcaacctcttaagaatataccctttgtatt---ttttacag----------------------------------------------------------------------
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ACTTACCGCTCTCGATAGCTGAGGAATTCAAGCAAGCTAATCCTGGCGTTGTAAAACTAGAGGCGATAGAAGGAGCTGGTCACATGCCGCAAGAGGACTGgtaactgttttcagaagcttgatgggttcagccaat--taacgt-ttacatacagtttttttttagaataacgtttacatacagtttcacgaattaaaagctgtgtacatccactaccctttagactttgtacatccttgacgcatctcacatcatctgcag
upper sequence: GLYMA08G22840.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0002g07500.t01 (Vitis vinifera), 5'ss of exon 10
ACTTGCCCCAGTCTGTAGCAGAGCAGTTTCAGAAAGGAAATCCAGCACAAATCCAGCTTAAATTGATTGAAGGAGCTGGTCATATGCCACAAGAGGACTGgtaagtaactt-tagttaacataggattccagtgaataataaaatgttttcttcaacctcttaagaatataccctttgtattttttacag
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ATCTGCCTCAATCAGTGGCAGAAGAGTTTCAAAAGGGAAACCCTGATTATATAAAACTTAAGTTGATAGAAGGTGCTGGTCATATGCCACAGGAGGACTGgtaattcacttctgaattgcattt-atgttagttaa-gcttacttttgccttttaactttttaacagtatactgttttggcag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6914784|gb|AW396314.1|AW396314EST: ATCCAGCTTAAATTGATTGAAGGAGCTGGTCATATGCCACAAGAGGACTG GCCTGAGAAAGTTGTTGATACTTTCAGAGTGTTCTTCTTCTGATTTCAACA
genomic: ATCCAGCTTAAATTGATTGAAGGAGCTGGTCATATGCCACAAGAGGACTGgtaagtaact ... ttttttacagGCCTGAGAAAGTTGTTGATACTTTCAGAGTGTTCTTCTTCTGATTTCAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTGCCCCAGTCTGTAGCAGAGCAGTTTCAGAAAGGAAATCCAGCACAAATCCAGCTTAAATTGATTGAAGGAGCTGGTCATATGCCACAAGAGGACTGgtaagtaactttagttaacataggattccagtgaataataaaatgttttcttcaacctcttaagaatataccctttgtattttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA