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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatagataaacgatctttcctgcctctcatttgtgaattttttaatcttttattgattatttttaactaccattgatcgtgtgggtctattcatgcagGTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCTATAAATAGATTCGTCCTGATGTTGGTTTCTAAATGTAAAATTTTGTTGA

Basic information

species Glycine max
transcript GLYMA08G20270.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268698|gb|CA819761.1|CA819761
EST:     TGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAAT                         GTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCT
genomic: TGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATgtactataga ... attcatgcagGTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCT
EST: gi|6719946|gb|AW307593.1|AW307593
EST:     TGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAAT                         GTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCT
genomic: TGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATgtactataga ... attcatgcagGTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCT
EST: gi|208265683|gb|GE062198.1|GE062198
EST:     TGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAAT                         GTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCT
genomic: TGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATgtactataga ... attcatgcagGTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCT
EST: gi|10234484|gb|BE803372.1|BE803372
EST:     TGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAAT                         GTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCT
genomic: TGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATgtactataga ... attcatgcagGTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcttttattgattatttttaactaccattgatcgtgtgggtctattcatgcagGTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCTATAAATAGATTCGTCCTGATGTTGGTTTCTAAATGTAAAATTTTGTTGA
                                          tctattc  CT-rich tract
     tttattgattattttt  TA-rich tract