1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctacagggacattgcacacaagcagaaatttcacattgaagttgaatgatcttgaagcttttttttattctagaatttctctactctttaccacctacagGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAAT
species | Glycine max |
transcript | GLYMA08G20270.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTAAGTACAAAGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAG GTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCAEST: gi|10234484|gb|BE803372.1|BE803372
genomic: CATTAAGTACAAAGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGgtaatctagt ... ccacctacagGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCA
EST: CATTAAGTACAAAGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAG GTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTTGGGGACAAAATCA
genomic: CATTAAGTACAAAGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGgtaatctagt ... ccacctacagGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCA
atgatcttgaagcttttttttattctagaatttctctactctttaccacctacagGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAAT
tttctctactctttac CT-rich tract
ttttttttattctaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacagggacattgcacacaagcagaaatttcacattgaagttgaatgatcttgaagcttttttttattctagaatttctctactctttaccacctacagGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG