1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaagcaaacatataacaacttttgctgatctgaaacagttccctatcctatgagttctgaaattactgtcattaatgttgctattaaatatcttaaacagATCCTAAAAGCGAGATTCGCAGCGACTCTGTTTACATTCCGAGGGATGAGTCATTTGGTCACTTGAAGTCATCAGATTTCCTTGCTTATATACTCAAATC
species | Glycine max |
transcript | GLYMA08G20230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCTCGCAGAGGAAGAACTGGTAGAAACAAATCTAAAAAAG ATCCTAAAAGCGAGATTCGCAGGGACTCTGTTTACATTCCGAGGGATGAGTEST: gi|192320019|gb|FK013347.1|FK013347
genomic: CCCTCGCAGAGGAAGAACTGGTAGAAACAAATCTAAAAAAGgtaaggcttt ... tcttaaacagATCCTAAAAGCGAGATTCGCAGCGACTCTGTTTACATTCCGAGGGATGAGT
EST: CTTGCCTTACCCTCGCAGAGGAAGAACTGGTAGAAACAAATCTAAAAAAG ATCCTAAAAGCGAGATTCGCAGCGACTCTGTTTACATTCCGAGGGATGAGT
genomic: CTTGCCTTACCCTCGCAGAGGAAGAACTGGTAGAAACAAATCTAAAAAAGgtaaggcttt ... tcttaaacagATCCTAAAAGCGAGATTCGCAGCGACTCTGTTTACATTCCGAGGGATGAGT
tcctatgagttctgaaattactgtcattaatgttgctattaaatatcttaaacagATCCTAAAAGCGAGATTCGCAGCGACTCTGTTTACATTCCGAGGGATGAGTCATTTGGTCACTTGAAGTCATCAGATTTCCTTGCTTATATACTCAAATC
cattaat putative branch site (score: 3)
attaatgttgctatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagcaaacatataacaacttttgctgatctgaaacagttccctatcctatgagttctgaaattactgtcattaatgttgctattaaatatcttaaacagATCCTAAAAGCGAGATTCGCAGCGACTCTGTTTACATTCCGAGGGATGAGTCATTTGGTCACTTGAAGTCATCAGATTTCCTTGCTTATATACTCAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - caaacat
- - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct