1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catatgtgaaggtttatgattcaatctgttgagcaaaagtttaatactataagtgtatacattgtttattctaattgtttttttatacttggggttacagGTTAAATACTCATGCAGTGACAGAGCCCTTCATCATAGCAACAAACAGGCGTCTCAGTGTGCTTCACCCCATTTATAAACTTCTTTATCCTCACTATCGT
species | Glycine max |
transcript | GLYMA08G20220.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTCATGTTATTGTAAATGACTCGGGCTATCATCAACTCATGAGCCACTG GTTAAATACTCATGCAGTGACAGAGCCCTTCATCATAGCAACAAACAGGCGEST: gi|254317561|gb|GR826545.1|GR826545
genomic: GCTCATGTTATTGTAAATGACTCGGGCTATCATCAACTCATGAGCCACTGgtatgaactt ... ggggttacagGTTAAATACTCATGCAGTGACAGAGCCCTTCATCATAGCAACAAACAGGCG
EST: GCTCATGTTATTGTAAATGACTCGGGCTATCATCAACTCATGAGCCACTG GTTAAATACTCATGCAGTGACAGAGCCCTTCATCATAGCAACAAACAGGCG
genomic: GCTCATGTTATTGTAAATGACTCGGGCTATCATCAACTCATGAGCCACTGgtatgaactt ... ggggttacagGTTAAATACTCATGCAGTGACAGAGCCCTTCATCATAGCAACAAACAGGCG
actataagtgtatacattgtttattctaattgtttttttatacttggggttacagGTTAAATACTCATGCAGTGACAGAGCCCTTCATCATAGCAACAAACAGGCGTCTCAGTGTGCTTCACCCCATTTATAAACTTCTTTATCCTCACTATCGT
ttctaat putative branch site (score: 2)
tatacattgtttattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatgtgaaggtttatgattcaatctgttgagcaaaagtttaatactataagtgtatacattgtttattctaattgtttttttatacttggggttacagGTTAAATACTCATGCAGTGACAGAGCCCTTCATCATAGCAACAAACAGGCGTCTCAGTGTGCTTCACCCCATTTATAAACTTCTTTATCCTCACTATCGT
- - -gtgaagg
- - - - - - - - - - - - tctgttg