Sequence
atgc intronic sequence ATGC exonic sequenceATAGGCGGAGGCATTCACCATCTCCTGTGGGACACAGGTATAGCAGGAGGAGCAGAAGAGACAGAAGCAGATCTCCTTATTCATCCTACTCTTACAACAGgtgaccccgttcataagtttgtttttgcttatgatatattttgtatcgagttatgatgaattggggattaatgtttttacaaatttatttgttatgtaac...
Basic information
species | Glycine max |
transcript | GLYMA08G19850.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G19850.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G10890.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAGGCGGAGGCATTCACCATCTCCTGTGGGACACAGGTATAGCAGGAGGAGCAGAAGAGACAGAAGCAGATCTCCTTATTCATCCTACTCTTACAACAGgtgaccccgttcataagt-ttgtttttgcttatgatatattttg--tatcga--gttatgatgaattg--gggattaatgtttttacaaatttatttgttatgtaac
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GTCGTAGAAAGCACTCGAGGTCTCCCGTAAGGCAGAGGCATAGCAGGAGGAGTAGAAGAGACAGAAGCCCTTCTCCATACTCATCTCATTCGTATAGCAGgtgatacccctagtgtttgttttttccgctattcgtttgccttagttatcattcgtttatacgaactgtaagaaacattggtggaacacggttatagata-------
upper sequence: GLYMA08G19850.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0034g01780.t01 (Vitis vinifera), 5'ss of exon 2
ATAGGCGGAGGCATTCACCATCTCCTGTGGGACACAGGTATAGCAGGAGGAGCAGAAGAGACAGAAGCAGATCTCCTTATTCATCCTACTCTTACAACAGgtgaccccgttcataagtttgtttttgcttatgatatattttgtatcgagttatgatgaattggggattaatgtttttacaaat--ttatttgttatgtaac-
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ACCGGCGGAGGTATTCGCCCTCGCCGGTGGGCCACAGGTATGGCAGGAGGAGCCGGAGAGATCGAAGCCGTTCTCCCTATTCATCCTATTCTCATAGCAGgtgatcccgttggtt--ttcgatgctttgcttgatttattt-atttatttttgtgaatttttgatgagcaatttttagaaagatggtgactgactccatatctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193701680|gb|FK639532.1|FK639532EST: AGCAGAAGAGACAGAAGCAGATCTCCTTATTCATCCTACTCTTACAACAG GCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACTAC
genomic: AGCAGAAGAGACAGAAGCAGATCTCCTTATTCATCCTACTCTTACAACAGgtgaccccgt ... catcatacagGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAGGCGGAGGCATTCACCATCTCCTGTGGGACACAGGTATAGCAGGAGGAGCAGAAGAGACAGAAGCAGATCTCCTTATTCATCCTACTCTTACAACAGgtgaccccgttcataagtttgtttttgcttatgatatattttgtatcgagttatgatgaattggggattaatgtttttacaaatttatttgttatgtaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT