1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgtatttagtgtgctagatggtgggaagcatttatattctctaaagatagcttttttgttgctgaggttcattgcttatgatcatgtgtcatcatacagGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACTACTCCAAGACGTCGTAGAAGCCGAACTCCATCTGCTAAACGATACAGAAGA
species | Glycine max |
transcript | GLYMA08G19850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGAAGAGACAGAAGCAGATCTCCTTATTCATCCTACTCTTACAACAG GCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACTAC
genomic: AGCAGAAGAGACAGAAGCAGATCTCCTTATTCATCCTACTCTTACAACAGgtgaccccgt ... catcatacagGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACTAC
agatagcttttttgttgctgaggttcattgcttatgatcatgtgtcatcatacagGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACTACTCCAAGACGTCGTAGAAGCCGAACTCCATCTGCTAAACGATACAGAAGA
ttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtatttagtgtgctagatggtgggaagcatttatattctctaaagatagcttttttgttgctgaggttcattgcttatgatcatgtgtcatcatacagGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACTACTCCAAGACGTCGTAGAAGCCGAACTCCATCTGCTAAACGATACAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - -gtgtgct
- - - - - - - - - -tggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtg