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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgtggataaaatagctcatttgtaaagtgctttgctgcatttaacattatcatttaaaaataatttatgtttctgtttctattaatattcatacttagGTTGAATCGGTGGGTGCTGGAATTCATCGACTTAGGAGGCGAGATGAGGAGGGATGTTTGGCATGCATTTATAAATGAAGTCATCGCTTTACATAGGTTC

Basic information

species Glycine max
transcript GLYMA08G19800.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19800.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0034g01220.t01 (Vitis vinifera), 3'ss of exon 7
--tgtgtggataaaatagctcatttgtaaagtgctttgctgcatttaacattatcatttaaaaataatttatgtttctgtttctatta-atattcatacttagGTTGAATCGGTGGGTGCTGGAATTCATCGACTTAGGAGGCGAGATGAGGAGGGATGTTTGGCATGCATTTATAAATGAAGTCATCGCTTTACATAGGTTC
  | | ||  |    |  |    |||   |     |  || |||||  |||  |    |  |  ||    |  ||    | ||||| | ||||| ||| | ||||   |    ||||||||||||||  | ||||||||||| || |||||  | ||||| ||| |||||||||| |||||||| || |||||| | | ||||
gttatttgctttggttcacatggttgaggatcatctgtcttcatttg-catctttgacttgattta--caaaattcacatctctatcatatatttatattcagGTCCGAAACATGGGTGCTGGAATTTGTGGACTTAGGAGGTGAAATGAGACGAGATGTCTGGTATGCATTTATTAATGAAGTTATTGCTTTATACAAGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattatcatttaaaaataatttatgtttctgtttctattaatattcatacttagGTTGAATCGGTGGGTGCTGGAATTCATCGACTTAGGAGGCGAGATGAGGAGGGATGTTTGGCATGCATTTATAAATGAAGTCATCGCTTTACATAGGTTC
                                    tattaat  putative branch site (score: 2)
        atttaaaaataattta  TA-rich tract