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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtccatttaattatcaaatactgtaatactgaataaactttattattttattttcaaaaaataaatgcaatgctcattgcttttggacatgtctatagGACCCTGCATTCCAGAGGCTGATATTCATAACCATGCTTGCCTGGGAAAATCCTTACACTAATGACCTTTCCAGCAATTCAGAGAAGGCTTCTTTACAG

Basic information

species Glycine max
transcript GLYMA08G19800.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19800.2 (Glycine max), 3'ss of exon 4
lower sequence: AT1G71240.1 (Arabidopsis thaliana), 3'ss of exon 3
ttgtccatttaattatcaaatactgtaatactgaataaactttattattttattttcaaaaaataaatgcaatgctcattgcttttgga------------catgtct--atagGACCCTGCATTCCAGAGGCTGATATTCATAACCATGCTTGCCTGGGAAAATCCTTACACTAATGACCTTTCCAGCAATTCAGAGAAGGCTTCTTTACAG-------
                    ||     | ||||   |  |||||   || |  ||||| |||   |  | | || | |||| |||  ||             || |||  |||||| ||||||||||||||||| |||||||| || ||||| || ||||  ||||| ||   ||| ||       || ||| ||   || | | | | |          
-------------------gtatctggaaactggg-atgctttacacttattgtttcagaaatggagagtattgtttattggtttctgaagcattgaaaattatctcttcatagGAACCTGCATTCCAGAGGCTTATATTCATCACAATGCTCGCGTGGGCGAATCCATATTGTAAAGAA------AGAAATGCACGCAATGATGCCTCAGGAAAACCTT

upper sequence: GLYMA08G19800.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0034g01220.t01 (Vitis vinifera), 3'ss of exon 3
ttgtccatttaattatcaaatactgtaatactgaataaactttattattttattttcaaaaaataaatgcaatgctcattgcttttggac--------atgtctatagGACCCTGCATTCCAGAGGCTGATATTCATAACCATGCTTGCCTGGGAAAATCCTTAC------ACTAATGACCT---TTCCAGCAATTCAGAGAAGGCTTCTTTACAG
        || || || |  |  ||| | ||    ||    ||| ||  |||| |  |      |  ||   |  |  ||  ||||||           ||  || |||| |||||||||||||| ||||| ||||| || ||||| || ||||| |||||||||       | |||||      | | |    || |||||| ||||        
------gatttatcataatcttttgtgagacctg-taggacttactaaattatctg-attggccagttgggtttttttttttttttgggataaatttggtgcttacagGAACCTGCATTCCAGAGACTGATTTTCATTACAATGCTCGCATGGGAGAATCCTTACTATGAAGCAAATGATTCAAATGCTATTGGTTTAGAGAAAGCTT--------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttattttcaaaaaataaatgcaatgctcattgcttttggacatgtctatagGACCCTGCATTCCAGAGGCTGATATTCATAACCATGCTTGCCTGGGAAAATCCTTACACTAATGACCTTTCCAGCAATTCAGAGAAGGCTTCTTTACAG
     tattttcaaaaaataa  TA-rich tract