1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GACTAAAGCAGAGCCTCCAATCTACTATTTGCCTAACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaacttggaaatttgatttcttttggtcttcatcttatagcatcattttgttcaccatggacagccatcccagatttgcccgttaaatctcctc...
species | Glycine max |
transcript | GLYMA08G19640.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTTGAGAAGNGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|193448419|gb|FK415958.1|FK415958
genomic: CTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|193496460|gb|FK460702.1|FK460702
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|207700607|gb|GD683714.1|GD683714
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|207731212|gb|GD708869.1|GD708869
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|193672521|gb|FK618541.1|FK618541
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTTAGTATCAGEST: gi|193370194|gb|FK336756.1|FK336756
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|208084949|gb|GD882785.1|GD882785
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|207826946|gb|GD797467.1|GD797467
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: AGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|208108322|gb|GD903520.1|GD903520
genomic: AGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|208122350|gb|GD920815.1|GD920815
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|208239294|gb|GE041782.1|GE041782
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGEST: gi|208056996|gb|GD851245.1|GD851245
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAG GCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaac ... cacttttcagGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTAAAGCAGAGCCTCCAATCTACTATTTGCCTAACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGgttgtcaaacttggaaatttgatttcttttggtcttcatcttatagcatcattttgttcaccatggacagccatcccagatttgcccgttaaatctcctc
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG