1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtccttcacagtctcccttatatataaaagaaaattcaatcctataatgatacaaatttgacactgatggatgatttcctgatgcagGTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAAACAAGGTGCCAATGACAAACATGAACATGAGGGCAGATCCTGCGACAGGTTACCCTGG
species | Glycine max |
transcript | GLYMA08G19280.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCTGGTGGAGCTGCCATAGCTGATGTGA-TTTTGGG-TTTATAATCCAA GTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAAACAAGGTGCEST: gi|6747184|gb|AW317640.1|AW317640
genomic: AGCTGGTGGAGCTGCCATAGCTGATGTGATTTTTGGGTTTTATAATCCAAgtaagtcctt ... cctgatgcagGTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAAACAAGGTGC
EST: AGCTGGTGGAGCTGCCATAGCTGATGTGATTTTTGGGTTTTATAATCCAA GTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAAACAAGGTGC
genomic: AGCTGGTGGAGCTGCCATAGCTGATGTGATTTTTGGGTTTTATAATCCAAgtaagtcctt ... cctgatgcagGTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAAACAAGGTGC
aattcaatcctataatgatacaaatttgacactgatggatgatttcctgatgcagGTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAAACAAGGTGCCAATGACAAACATGAACATGAGGGCAGATCCTGCGACAGGTTACCCTGG
tcctgat putative branch site (score: 3)
tttcct CT-rich tract
tataatgatacaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccttcacagtctcccttatatataaaagaaaattcaatcctataatgatacaaatttgacactgatggatgatttcctgatgcagGTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAAACAAGGTGCCAATGACAAACATGAACATGAGGGCAGATCCTGCGACAGGTTACCCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT