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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacatttacttttccaattttgtaggcagtctcctaattcttatatttttgtactgactactgagtgctgacttttattgtttatgcag

Basic information

species Glycine max
transcript GLYMA08G00560.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 8
ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacatttacttttccaattttgtaggcagtctcctaattcttatatttttgtactgactactgagtgctgacttttattgtttatgcag
|||   ||||||||||||||  || |||| ||||| || || ||| || | ||||| ||||||||||| |||||||| ||| |||||||  | |||||||||  ||  |  |||      |        | | || || | ||  | | | ||     | |    |||  | | | || |   |       
ACTGTTAACCCAGATTGTGCCACATTAGAAACAACAATTCTTGATACATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTATTGACAAAGgtgccaactgatttctgtcctcatctttgactatcgtactgctactttatatgctacaagtttaaagtcttcattattgtaaatag-----

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G177485_T01 (Zea mays), 5'ss of exon 3
ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacatttacttttccaattttgtaggcagtctcctaattcttatatttttgtactgactactgagtgctgacttttattgtttatgcag
||| || |||| ||||||||  || | || ||||| || || |||||||| ||||| ||||||||||| |||||||| ||| |||||||  | ||   ||||||  |||  || | | |   |  |||  | || ||      |  ||  ||  | ||  ||     |  |   |||  |||   |     
ACTGCACACCCCGATTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagccta-aggttgcctgct------ttgatgcttccattgtgtatctgattttccttttccttgaacag----

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 8
ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacatttacttttccaattttgtaggcagtctcctaattcttatatttttgtactgactactgagtgctgacttttattgtttatgcag
||| || |||| || |||||  || | || ||||| || || |||||||| ||||| ||||||||||| |||||||| ||| |||||||  | ||   ||||||  |||  || | | |   |  |||  | || ||      |  ||  ||  | ||  ||     |  |   |||  |||   |     
ACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagccta-aggttgcctgct------ttgatgcttccattgtgtatctgattttccttttccttgaacag----

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G052277_T01 (Zea mays), 5'ss of exon 8
ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacatttacttttccaattttgtaggcagtctcctaattcttatatttttgtactgactactgagtgctgacttttattgtttatgcag
||| || |||| || |||||  || | || ||||| || || |||||||| ||||| ||||||||||| |||||||| ||| |||||||  | ||   ||||||  |||  || | | |   |  |||  | ||      | || | | | ||   |  ||  |   ||   |                  
ACTGCACACCCTGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttccagccta-aggttgccttacttctattgtgtatctgatgtttcttttccatgaacag-----------------

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G131118_T01 (Zea mays), 5'ss of exon 6
ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacatttacttttccaattttgtaggcagtctcc--taattcttatatttttgtactgactactgagtgctgacttttattgtttatgcag------------
||| || |||| || |||||  || | || ||||| || || |||||||| ||||| ||||||||||| |||||||| ||| |||||||  | ||   ||||||  |||  || | | |   |  |||  | || |  | || |||  ||| |    |||| |         |  | || |     |  ||||            
ACTGCACACCCCGACTGTGCTACATTGGACACAACAATCCTTGATGCACTACATATCATGCATGATGGCAAATTCTTGCATATTCCTGTTCTTGATGGAGgtaaactttgattcttctagccta-aggttgcctgctttgatgcttccattgtgtatctgattttcc----ttttccttgaacagatgggcaggttgctgcttgc

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 8
ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacatttacttttccaattttgtaggcagtctcctaattcttatatttttg-tactgactactgagtgctgacttttattgtttatgcag
||||||||||| || || ||| |  | || ||||| || || ||||| || || || |||||||| ||||| || |||||||||||||| |||||||||||| |   |||  ||    ||    |  ||| | |  | ||  | | || |||   |    ||  || |                        
ACTCCAAACCCTGAATGCGCAACCTTGGAGACAACAATCCTTGATGCGCTACACATAATGCATGACGGGAAGTTTTTACATCTTCCTGTTGTAGACAAAGgtgagcattatcttcttcatgcaat--gcatttttttcatgatgaaatatttaacatcatctgttgggcag---------------------

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 8
lower sequence: PP1S87_48V6.4 (Physcomitrella patens), 5'ss of exon 8
ACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgta-acatttacttttccaattttgtag---gcagtctcctaattcttatattt-ttgtactgactactgagtgctgacttttattgtttatgcag-----
|| || || ||||| || ||     | ||||| ||  |  |||||||||||||||  ||||| |||||||||||| | |||||||||||   |||    |||| | |      |  ||  || |||     | ||| |  |      ||||||  ||| |      |  | || |   ||| |   || | ||  |     
ACACCTAATCCAGAATGCGCGAGTTTGGATACGACTTTGGTGGATGCACTGCATACAATGCACGATGGGAAATTCCTCCATCTTCCTGTTAAAGATCGTGgtacatacgctgctcccctgttctgtgttttgtagtgttattgggagtatattagttgcaggtgtgatcgggt-cgtccttcttcggtgtctgaggtcttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427474|gb|CA938994.1|CA938994
EST:     GCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAG                         ATGGGTATGTAGTGGCTTGCATGGATGTTTTGCAGATAACTCATGCTGCAA
genomic: GCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAGACAAAGgtaacattta ... gtttatgcagATGGGTATGTAGTGGCTTGCATGGATGTTTTGCAGATAACTCATGCTGCAA