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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag

Basic information

species Glycine max
transcript GLYMA08G00560.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g07190.1 (Oryza sativa), 5'ss of exon 7
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag
 ||||||||  | || ||||||||||| || || |||||||||||||| ||||| || || |||||||||  |    ||  || | ||||  ||         ||    |   ||     | |   |   | | |   |   | ||||   ||   ||| |||   ||                                                   
CTCAAAGGATTTGCTTATGCGTGTTGTTGCACAGAATCTTTCTCCTGAATTGACCCTAGTAGAAAAGgtttctccaccagatttacattttcttgcctcttccgatgccatctgagctttgtttaattgcatatgaactcactgtgtt-actttcaattatttttgaag--------------------------------------------------

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g06930.1 (Oryza sativa), 5'ss of exon 7
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag
 ||||||||  | || ||||| |||||| | |||||||| ||||||||||| ||||  || ||||||||||||  | ||  || |   |||||||    || ||| || |         ||||  |    | |   | ||||    |       | | |   || |   |  |||                                            
CTCAAAGGATGTGCTTATGCGCGTTGTGACACAAAATCTCTCTCCTGAGTTAACTCATGTAGAAAAGgttgtttctccagattgaatattatttt----aaatgatttaaactaccgatgggttat----acaattcattctagactaacagcattactcactgttt--tgctcaag------------------------------------------

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G052277_T01 (Zea mays), 5'ss of exon 7
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag
  ||| |||  | || |||||||||||||| |||||||||||||||||||| ||||| || |||||||||  | ||    ||||  |||  ||  ||  ||     |||| |          |  | |  | ||    |  |  ||||| | ||                                                                 
CCCAAGGGATGTGCTGATGCGTGTTGTGGCCCAAAATCTTTCTCCTGAGTTAACTCTAGTAGAAAAGgtt--tcttgagatttatgattctttacttcaaaagttgttgaattttgtatttattttagacacagtgtctgttactgttttgatccag--------------------------------------------------------------

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G031609_T02 (Zea mays), 5'ss of exon 7
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag
 ||||||||  | || |||||||||||||| |||||||||||||||||||| ||||| || |||||||||  |  | ||  || ||  ||  | ||   ||     |||| |          || | |  | |     |    |  |||| | | |                                                               
CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATCTTTCTCCTGAGTTAACTCTAGTAGAAAAGgtttctcctgcagatttatgatttgtattccaaaagatgttgaattttgtattcatcctagacacacagtgtctactattttgatccag---------------------------------------------------------------

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G131118_T01 (Zea mays), 5'ss of exon 5
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaat-atttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag
 ||||||||  | || |||||||||||||| |||||| ||||||||||||| ||||| || |||||||||  |  | ||  || || |||| | ||    ||||   |  | |    |     || |  |        | |||  | ||| | ||                                                                 
CTCAAAGGATGTGCTGATGCGTGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTTGTAGAAAAGgtttcttctgcagatttatgatttttattccataagttgttgaattttgtat----tcatcctagacacattgtctactattttgatccag--------------------------------------------------------------

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 7
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag
 ||||| || ||||| |||||||||||| | |||||| |||| |||||||||||||| || ||||||||  ||   | || || | |||| | ||||     |    | ||| |       |   ||  |  |    | |   |   ||  || | |  ||||                                                        
CTCAAAAGATATACTTATGCGTGTTGTGTCACAAAATATTTCCCCTGAGTTGACTCTAGTAGAAAAGgt-attccattatatttacatttttgtttttcttattgtctaagttgcccagttgcttttacgctacctttgttcatcacttcattataacattttcag-----------------------------------------------------

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G177485_T01 (Zea mays), 5'ss of exon 2
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaat-atttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag
 ||||||||  |  | |||| ||||||||| |||||| ||||||||||||| |||||  | |||||||||  |  | ||  || || |||| | ||    ||||   |  | |    |     || |  |        | |||  | |||   ||                                                                 
CTCAAAGGATGTGTTGATGCATGTTGTGGCCCAAAATATTTCTCCTGAGTTAACTCTATTAGAAAAGgtttcttctgcagatttatgatttttattccataagttgttgaattttgtat----tcatcctagacacaatgtctactattttcatccag--------------------------------------------------------------

upper sequence: GLYMA08G00560.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0031g02750.t01 (Vitis vinifera), 5'ss of exon 7
TTCAAAGGACATACTAATGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtag
||||||||| || || ||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||      | | | |  | || |  || |||     ||  | |       ||| ||| | || | |      ||   ||  || | |||  |||    | |                                            
TTCAAAGGATATTCTTATGCGGGTTGTGGCACAAAACCTTTCTCCTGAGTTGACTCTGGTGGAAAAGgttgttgtt-----gtgaaactactgttgtataactgatcattgtttatatgtatgtgttttga-atgcatatagcccatt--attgagaatatttcataatgcctga--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427474|gb|CA938994.1|CA938994
EST:     TGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAG                         GTAATGACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGAT
genomic: TGCGTGTTGTGGCTCAAAATCTTTCTCCTGAGTTGACTCTCGTGGAAAAGgttgttattt ... tctaatgtagGTAATGACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGAT