Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11412546|gb|BF424557.1|BF424557EST: AGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAG GTGGGTAAACATCTTAAAGTTTTGACAAAGCACCCGAGGCTGAAAATTAAG
genomic: AGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAGgttatttttc ... aatttttcagGTGGGTAAACATCTTAAAGTTTTGACAAAGCACCCGAGGCTGAAAATTAAG
EST:
gi|192304001|gb|FG993859.1|FG993859EST: AGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAG GTGGGTAAACATCTTAAAGTTTTGACAAAGCACCCGAGGCTGAAAATTAAG
genomic: AGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAGgttatttttc ... aatttttcagGTGGGTAAACATCTTAAAGTTTTGACAAAGCACCCGAGGCTGAAAATTAAG
EST:
gi|298188298|gb|HO034991.1|HO034991EST: AGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAG GTGGGTAAACATCTTAAAGTTTTGACAAAGCACCCGAGGCTGAAAATTAAG
genomic: AGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAGgttatttttc ... aatttttcagGTGGGTAAACATCTTAAAGTTTTGACAAAGCACCCGAGGCTGAAAATTAAG
EST:
gi|9986902|gb|BE661010.1|BE661010EST: AGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAG GTGGGTAAACATCTTAAAGTTTTGACAAAGCACCCGAGGCTGAAAATTAAG
genomic: AGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAGgttatttttc ... aatttttcagGTGGGTAAACATCTTAAAGTTTTGACAAAGCACCCGAGGCTGAAAATTAAG
EST:
gi|254332899|gb|GR850149.1|GR850149EST: AGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAG GTGGGTAAACATCTTAAAGTTTTGACAAAGCACCCGAGGCTGAAAATTAAG
genomic: AGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAGgttatttttc ... aatttttcagGTGGGTAAACATCTTAAAGTTTTGACAAAGCACCCGAGGCTGAAAATTAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATCTCCGGCGACGGCAAACATGAGGAAAGCCGATGCATCGATGCGCTCGAGCAGCTCAAGAAGTTTCCCGTTAATTACAAGATTCTCGTCAACACCCAGgttatttttctctcattctttttctctctttattgttatgtttttttttttaagttttctttcctgggttttgattggttgatgtttttggatgagtttt
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT