Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192304001|gb|FG993859.1|FG993859EST: CGTTCCATTCTC GAGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGA
genomic: CGTTCCATTCTCgtgtgttttc ... ctgttttcagGAGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGA
EST:
gi|298188298|gb|HO034991.1|HO034991EST: ACAACAACAACAACACGTTCCATTCTC GAGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGA
genomic: ACAACAACAACAACACGTTCCATTCTCgtgtgttttc ... ctgttttcagGAGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGA
EST:
gi|9986902|gb|BE661010.1|BE661010EST: CGTTCCATTCTC GAGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGA
genomic: CGTTCCATTCTCgtgtgttttc ... ctgttttcagGAGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGA
EST:
gi|254332899|gb|GR850149.1|GR850149EST: CGTTCCATTCTC GAGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGA
genomic: CGTTCCATTCTCgtgtgttttc ... ctgttttcagGAGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattcatttattttgtttctttggggttttgatctgattggttttctgttttcagGAGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGAAGCGGCGAAGAAGGCGGCGGATGCTGCCATCTCCGGCGACGGCAAACAT
atctgat putative branch site (score: 4)
ttttctgttttc putative PPT
atttattttgtttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgttttcactctcttctctaatgtctagttccacaatttcttttctttattttattcatttattttgtttctttggggttttgatctgattggttttctgttttcagGAGGAGAGAGTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTACGAAGCGGCGAAGAAGGCGGCGGATGCTGCCATCTCCGGCGACGGCAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC