Sequence
atgc intronic sequence ATGC exonic sequenceAGATCCAAAGTAAATATGATAATCACAGACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAGgtattttttagctttttattctttttgactcatagatgcattcaatcatgcgatattaatagcaaccacaaactgcattattttttaaacag
Basic information
species | Glycine max |
transcript | GLYMA04G40100.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G40100.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G098474_T01 (Zea mays), 5'ss of exon 3
AGATCCAAAGTAAATATGATAATCACAGACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAGgta----ttttttagctttttattctttttgactcatagatgcattcaatcatgcgatattaatagcaaccacaaactgcattattttttaaacag----
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GAGCCGAACGTGAGTATGATAATCACCGATTACTGCATGCCAGAGATGACGGGATACGAGCTGCTCAAGAAGGTCAAGgtaaagatgatctgacgactagcccattctgcattctgca-acgtgaaatc-tgagccttcatttaagatcgctgacta-atgaagatccgtgcatgcag
upper sequence: GLYMA04G40100.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0067g03070.t01 (Vitis vinifera), 5'ss of exon 3
AGATCCAAAGTAAATATGATAATCACAGACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAGgtattt----tttagcttttta------ttctttttgactcatagatgcattcaatc----atgcgatattaatagcaaccacaaactgcattattttttaaacag
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GTTTCAAAGGTGAATTTGATAATTACAGACTACTGTATGCCAGGAATGACAGGCTATGAGCTGCTCAAGAGAGTCAAGgttagtaaagtcaaattttccaggaaagttccctctgctttaacctttttttaagcccttaattctttatttttatacttttctttttttctctccttccaagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298163324|gb|HO012057.1|HO012057EST: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAG GAATCGTCTGTAATGAAGGAG
genomic: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAGgtatttttta ... ttttaaacagGAATCGTCTGTAATGAAGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATCCAAAGTAAATATGATAATCACAGACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAGgtattttttagctttttattctttttgactcatagatgcattcaatcatgcgatattaatagcaaccacaaactgcattattttttaaacag
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