Sequence
atgc intronic sequence ATGC exonic sequencegtattttttagctttttattctttttgactcatagatgcattcaatcatgcgatattaatagcaaccacaaactgcattattttttaaacagGAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTAAAATTCTTAACATTAGCTATATATAT
Basic information
| species | Glycine max |
| transcript | GLYMA04G40100.2 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G40100.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0067g03070.t01 (Vitis vinifera), 3'ss of exon 3
------------gtattttttagctt--tttattctttttgactcatagatgcattcaatcatgcgatattaatagcaaccacaaactgcattattttttaaacagGAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTAAAATTCTTAACATTAGCTATATATAT
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gttagtaaagtcaaattttccaggaaagttccctctgctttaacctttttttaagcccttaattctttatttttatacttttctttttttctctccttccaagcagCAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAA-----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298163324|gb|HO012057.1|HO012057EST: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAG GAATCGTCTGTAATGAAGGAG
genomic: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATTAAGgtatttttta ... ttttaaacagGAATCGTCTGTAATGAAGGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcattcaatcatgcgatattaatagcaaccacaaactgcattattttttaaacagGAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTAAAATTCTTAACATTAGCTATATATAT
tattaat putative branch site (score: 2)
ttatttttt putative PPT
attattttttaaaca TA-rich tract
