Sequence
atgc intronic sequence ATGC exonic sequenceAATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTGAAGGACTGgtattgatgctcattcttgttgcatgtgttaaatttttttgctgtgtgtagcttttgatggtcaagcaatcttaagggacatatgtatttggctccccgttcctctttacag
Basic information
species | Glycine max |
transcript | GLYMA04G40090.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G40090.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G40660.1 (Arabidopsis thaliana), 5'ss of exon 9
AATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTGAAGGACTGgtattgatgctcattcttgt-tgcatgtgttaaatttttttgctgtgtgtagcttttgatggtcaagcaatcttaagggacatatgtatttggctccccgttcctctttacag
|| || | |||| ||| || |||||||||||||||||||| ||| | ||||| ||||| ||||||||||| || ||| | ||| ||| | | | | | ||| | | ||| | || || | | ||| |||| | || | | |||
AACCGCCTCGTTGCACTCATCACAAATGTCAAACCTGGAAAGCTAAGAGATGTAATGTCACAAGGACTGgta---atactctcttctgtctgcctcaatccagctcatcagctat-caaaatatttcacactctcacatttgctcattttctgtgtttttgatt------tctttgctgcag
upper sequence: GLYMA04G40090.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0067g03060.t01 (Vitis vinifera), 5'ss of exon 9
AATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTGAAGGACTGgtattgatgctcattct-tgttgcatgtgttaaatttttttgctgtgtgtagcttttgatggtcaagcaatcttaagggacatatgta-tttggctccccgttcctctttacag
|| ||||||||||| || || |||||||| ||||||||||| ||||| ||||||||||| |||||||||||| | || | | | || ||| | | ||| | ||||| | ||| ||||| || | | ||| | | ||| | |
AACCGTCGTGTTGTGCTAATCACAAATGTTAAACCTGGAAAGCTACGAGATGTGATGTCAGAAGGACTGgtaatcatttttcccttgtattatggttgtcagactttgctcatgtgtctg--ctttatcagtcaaataaagatgcatgtcatgtccagtttagttatgaaa------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209709848|gb|BW668278.1|BW668278EST: TAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTGAAGGATTG GTCTTATGTGCTTCGAATGAAGGTCCAACCATTGTGGAGCCCTTGCTCCCT
genomic: TAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTGAAGGACTGgtattgatgc ... ctctttacagGTCTTATGTGCTTCGAATGAAGGTCCAACCATTGTGGAGCCCTTGCTCCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATCGTCGTGTTGTACTTATAACAAATGTCAAACCTGGAAAACTACGGGATGTGATGTCTGAAGGACTGgtattgatgctcattcttgttgcatgtgttaaatttttttgctgtgtgtagcttttgatggtcaagcaatcttaagggacatatgtatttggctccccgttcctctttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG