1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgttcctttaacaaaattgatatgctccccagaacttgcatgttttgtgcttttcctgttaattatcctgagttgtatattattcaaattcaaatttagGTGTTGAAGTGGGTAGCATTTGCAGAAGCCTTCCCCGTGGCCCTTGATGCATGCTTTGAGAATCTCAAGAGATTAAATGATGAACTGTCTGGAAAGGCTG
species | Glycine max |
transcript | GLYMA04G40090.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTTGAACATCATAGCGGTTTCTGGACATAGGGTTAATCACTCTGATGAG GTGTTGAAGTGGGTAGCATTTGCAGAAGCCTTCCCCGTGGCCCTTGATGCAEST: gi|18040120|gb|BM308414.1|BM308414
genomic: ACTTGAACATCATAGCGGTTTCTGGACATAGGGTTAATCACTCTGATGAGgtaaccaggt ... tcaaatttagGTGTTGAAGTGGGTAGCATTTGCAGAAGCCTTCCCCGTGGCCCTTGATGCA
EST: ACTTGAACATCATAGCGGTTTCTGGACATAGGGTTAATCACTCTGATGAG GTGTTGAAGTGGGTAGCATTTGCAGAAGCCTTCCCCGTGGCCCTTGATGCAEST: gi|192297198|gb|FG988294.1|FG988294
genomic: ACTTGAACATCATAGCGGTTTCTGGACATAGGGTTAATCACTCTGATGAGgtaaccaggt ... tcaaatttagGTGTTGAAGTGGGTAGCATTTGCAGAAGCCTTCCCCGTGGCCCTTGATGCA
EST: ACTTGAACATCATAGCGGTTTCTGGACATAGGGTTAATCACTCTGATGAG GTGTTGAAGTGGGTAGCATTTGCAGAAGCCTTCCCCGTGGCCCTTGATGCAEST: gi|193642461|gb|FK593271.1|FK593271
genomic: ACTTGAACATCATAGCGGTTTCTGGACATAGGGTTAATCACTCTGATGAGgtaaccaggt ... tcaaatttagGTGTTGAAGTGGGTAGCATTTGCAGAAGCCTTCCCCGTGGCCCTTGATGCA
EST: ACTTGAACATCATAGCGGTTTCTGGACATAGGGTTAATCACTCTGATGAG GTGTTGAAGTGGGTAGCATTTG
genomic: ACTTGAACATCATAGCGGTTTCTGGACATAGGGTTAATCACTCTGATGAGgtaaccaggt ... tcaaatttagGTGTTGAAGTGGGTAGCATTTG
ttgtgcttttcctgttaattatcctgagttgtatattattcaaattcaaatttagGTGTTGAAGTGGGTAGCATTTGCAGAAGCCTTCCCCGTGGCCCTTGATGCATGCTTTGAGAATCTCAAGAGATTAAATGATGAACTGTCTGGAAAGGCTG
tgttaat putative branch site (score: 3)
agttgtatattattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttcctttaacaaaattgatatgctccccagaacttgcatgttttgtgcttttcctgttaattatcctgagttgtatattattcaaattcaaatttagGTGTTGAAGTGGGTAGCATTTGCAGAAGCCTTCCCCGTGGCCCTTGATGCATGCTTTGAGAATCTCAAGAGATTAAATGATGAACTGTCTGGAAAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- gttcctt
- - - - - aacaaaa
- - - - - - - - - tgatatg
- - - - - - - - - - - - -ctcccca
- - - - - - - - - - - - - - - - - -cttgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgagtt