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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATGgttagtgactttatatattttttcctcaagcagttaatatccaatctttgtttgctatgttaaattagtattttcttaatatataacatgctaatctatt...

Basic information

species Glycine max
transcript GLYMA04G40060.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40060.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0067g03030.t01 (Vitis vinifera), 5'ss of exon 7
GGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATGgttagtgac--tttatatattttttcctcaagcagttaat--atccaa---tctttgtttgctatgttaaattagtattttcttaatatataacatgctaatctatt
|| || || ||||||||||| ||||||||||| || || ||| |||| ||||| |||||| |||||||||||||||| |   ||||  | ||| |||||        ||||  ||  ||   ||||  |   ||     || |   | ||    | ||   | | ||  | |      
GGGAACAAGAGGACACCACAGCGCTTTGTTGGACGTGAGGCTGTTGTAACAACACAATGCTTGAATGGATGgttagtcatattttacctttttcttccttctatttctaatgaatttaaaggtcttgatcaactgctcaaagtagattttgatgtgatg-gtcaaataatga------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21285816|gb|BQ473687.1|BQ473687
EST:     CGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATG                         GTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCG
genomic: CGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATGgttagtgact ... ttgtgtacagGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCG
EST: gi|11688477|gb|BF596153.1|BF596153
EST:     CGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATG                         GTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCG
genomic: CGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATGgttagtgact ... ttgtgtacagGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCG