Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtgtgagctggcttgattttacttacaagtgtttttaccttttttctgaaaaggagataattagagaaaaaatgaatcagGGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATG

Basic information

species Glycine max
transcript GLYMA04G40060.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40060.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G05230.1 (Arabidopsis thaliana), 3'ss of exon 6
--------------gtagtgtgtgagctggcttgattttacttacaagtgtttttacctt------ttttctgaaaaggagataattagagaaaaa-atgaa-tcagGGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATG
               |  |        | | ||  | |  | ||    |||| |||   |      || |  ||   |   |   || ||| ||||  |||| |||||||||||| ||||||||||  || |||||||| || |||||| |||| || || |||||| | ||||| ||
gtcagtcctttcttcttttcccctgcattgttttctgtatcgtaggtatgttcttataatggaagattgtgagagttgctaaccgttggagtaaaacgtgaaatcagGGAAATAAGAGGACACCACCTCGTTTTGTTGGCCGGGAAGCTGTTGTGACTACTCAATGCTTAAATGGCTG

upper sequence: GLYMA04G40060.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0067g03030.t01 (Vitis vinifera), 3'ss of exon 6
--------------------gtagtgtgtgagctggcttga-ttttactta-caagtgtttttaccttttttctgaaaaggagataattagagaaaaaatgaatcagGGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATG
                     ||  |  | |     |   | ||||  | | || |  | ||| | ||     || ||   |   ||||||||| |||||| ||||||| || || ||||||||||| ||||||||||| || || ||| |||| ||||| |||||| ||||||||||
gttattttttttatcattttttaaagaataaaagtccccaagttttgttcatcatgcttgtttgctttcaagttgcaattaa--caattagagagaaaatggatcagGGGAACAAGAGGACACCACAGCGCTTTGTTGGACGTGAGGCTGTTGTAACAACACAATGCTTGAATGGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21285816|gb|BQ473687.1|BQ473687
EST:     GTAGAGGTGTTCAGTTTCCATTTGCTGTGATGGACCGGGTTATCATAAAG                         GGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACA
genomic: GTAGAGGTGTTCAGTTTCCATTTGCTGTGATGGACCGGGTTATCATAAAGgtagtgtgtg ... aatgaatcagGGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACA
EST: gi|11688477|gb|BF596153.1|BF596153
EST:     GAGGTGTTCAGTTTCCATTTGCTGTGATGGACCGGGTTATCATAAAG                         GGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACA
genomic: GAGGTGTTCAGTTTCCATTTGCTGTGATGGACCGGGTTATCATAAAGgtagtgtgtg ... aatgaatcagGGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagtgtttttaccttttttctgaaaaggagataattagagaaaaaatgaatcagGGAAATAAAAGGACACCACAACGCTTTGTTGGGCGCGAAGCTATTGTTACAACGCAATGCCTGAATGGATG
                               ataattagagaaaaaa  TA-rich tract