Sequence
atgc intronic sequence ATGC exonic sequenceACTTCTACCATCCGTTTAAGGAAGATGAACTTGAACAGAGCACTGAAGTTCAAATAATATTTCCAGCAGAGCCAAAGCCGgtaattatgattgaaaaaagttttgcaaagatgtccccaattttggattgcttgggattgttttttatatgacatgtttacatacgagtaaggcaggttagtaccatattaggttttctacatgcttacttatctatcacttttttctcttttttcctgcag
Basic information
species | Glycine max |
transcript | GLYMA04G39790.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G39790.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G10010.1 (Arabidopsis thaliana), 5'ss of exon 9
ACTTCTACCATCCGTTTAAGGAAGATGAACTTGAACAGAGCACTGAAGTTCAAATAATATTTCCAGCAGAGCCAAAGCCGgtaattatgattgaaaaaagttttgcaaagatgtccccaattttggattgcttgggattgttttttatatgacatgtttacatacgagtaaggcaggttagtaccat-attaggttttctacatgcttacttatctatcacttttttctcttttttcctgcag
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ATTTCTATCAACCCTTTAAGGAAGATGAACTTGAACAGAGTACTGAGGTCCAAATAATGTTCCCCTCTGAACCC---CCGgtaagttttctggca--------tgcaatga------ctgttttgaagtggcagg--------tctacatgaaatgatctgatagggggacattgttttggggttttcatcaagcttt--gattttctgtttgtgcag-------------------------
upper sequence: GLYMA04G39790.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0031g01480.t01 (Vitis vinifera), 5'ss of exon 9
ACTTCTACCATCCGTTTAAGGAAGATGAACTTGAACAGAGCACTGAAGTTCAAATAATATTTCCAGCAGAGCCAAAGCCGgtaat---------tatgattgaaaaaagtt------------ttgcaaaga---tgtccccaattttggattgcttgggattgttttttatatgacatgtttacatacgagtaaggcaggttagtacca-tattaggttttctacatgcttacttatctatcacttt--tttctcttttttcctgcag
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ATTTTTATCAGCCATTCAAGGAAGATGAGCTGGAGCAGAGTACTGAGGTTCAAATAATATTTCCAGCTGAATCAAAGCCGgtaagatgatagcatgtgatgaggaaaaactaatgtcccattatttcaaggaatatttggttggttttatgtagct-aagaccaacttgttgatga-gtaatgaccaacaaataggggttgctcgtatgaataggatgattgaagcaaatatactgaaaaattctgtaaatttttccttctccttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8401846|gb|BE057480.1|BE057480EST: TTGAACAGAGCACTGAAGTTCAAATAATATTTCCAGCAGAGCCAAAGCCG GTTTTCTGTGAATTTGATTGGGAATTAGATGAGCTTGAG
genomic: TTGAACAGAGCACTGAAGTTCAAATAATATTTCCAGCAGAGCCAAAGCCGgtaattatga ... tttcctgcagGTTTTCTGTGAATTTGATTGGGAATTAGATGAGCTTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTCTACCATCCGTTTAAGGAAGATGAACTTGAACAGAGCACTGAAGTTCAAATAATATTTCCAGCAGAGCCAAAGCCGgtaattatgattgaaaaaagttttgcaaagatgtccccaattttggattgcttgggattgttttttatatgacatgtttacatacgagtaaggcaggttagtaccatattaggttttctacatgcttacttatctatcacttttttctcttttttcctgcag
- - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - CTGAAG