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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAAATTGGGATTAACTCAGTTCAGAGAGAGTTCGAAGAGATAATTCCCATGAAACAAATGAAAATGGACTGGATTCCATATATCCCCCTTGAGGACCGgtattcttctcaatttggctattctgagaggtttttttgaaatattgcttcatgattatctatgaacttatttatataattaattttttgtcttcaacag

Basic information

species Glycine max
transcript GLYMA04G39790.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39790.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0031g01480.t01 (Vitis vinifera), 5'ss of exon 6
ATAAAATTGGGATTAACTCAGTTCAGAGAGAGTTCGAAGAGATAATTCCCATGAAACAAATGAAAATGGACTGGATTCCATATATCCCCCTTGAGGACCGgtattcttctcaatttggctattctgagaggtttttttgaaatattgcttcatgattatctatgaacttatttatataattaattttttgtcttcaacag
|||| ||||| ||||||||||||||||| |||   ||||| ||| |||| ||||| |||||||||||||||||| |||||||||| ||  | ||| || ||||    | |  |  ||    ||||  |    ||| |    ||    |||     |||| |||  | | || |   ||    ||    | ||||| ||||
ATAAGATTGGAATTAACTCAGTTCAGAGGGAGGCTGAAGAAATAGTTCCTATGAAGCAAATGAAAATGGACTGGGTTCCATATATTCCTTTGGAGAACAGgtag--gttttgaactgat--ttcttggtatctttctccgcattcatctttgaagttatttatccattgatgtccttatgcgatcccat-tcttctacag

upper sequence: GLYMA04G39790.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S104_96V6.1 (Physcomitrella patens), 5'ss of exon 5
ATAAAATTGGGATTAACTCAGTTCAGAGAGAGTTCGAAGAGATAATTCCCATGAAACAAATGAAAATGGACTGGATTCCATATATCCCCCTTGA-------------GGACCGgtattcttctcaatttggctattctgagaggtttttttg-aaatattgcttcatgat-tatctatgaact-tatttatataattaattttttgtcttcaacag-----------------
   | || || || || || || || |||||    ||    ||  ||||||||||  | |||||||||||||||||||||| |||||||| |||             | ||     ||       ||||  |   |   | | || | ||    | ||   |||  | || ||   | ||    |  || | | |||    |  | ||   ||||                  
---AGATAGGTATCAAGTCCGTGCAAAGAGAAGAGGAGCTAATTGTTCCCATGAAGGAGATGAAAATGGACTGGATTCCATTTATCCCCCCTGATGTGATGGAgtgagaacttaactttgcgctcatttcccccctagaataagtgtattaacgagtacgactttgtaatgtacaaacgagtaatgcttctctgatttggctagt-tcactaacaatgcaatgcatgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411271|gb|EV281082.1|EV281082
EST:     ATGAAACAAATGAAAATGGACTGGATTCCATATATCCCCCTTGAGGACCG                         AGAAAGCCGAGTTGATAGATTAAAGTCTCAAATATTTATCTTAAGTTGCAC
genomic: ATGAAACAAATGAAAATGGACTGGATTCCATATATCCCCCTTGAGGACCGgtattcttct ... tcttcaacagAGAAAGCCGAGTTGATAGATTAAAGTCTCAAATATTTATCTTAAGTTGCAC