1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgaataatatttctttcttatttgagggtaaaattctgtgaactattgtgctattggacatagtttgctatatttctgagtataccttgttcaaatgtagATTGAAGAGAAGCATAGGGACCTTTGTCGCTTAGTGATACAATTTATACCACCTACGAATTCTCCCCAGTTACCTGGAGCAGTATTTAGGACATTTTTAC
species | Glycine max |
transcript | GLYMA04G39780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttgtgctattggacatagtttgctatatttctgagtataccttgttcaaatgtagATTGAAGAGAAGCATAGGGACCTTTGTCGCTTAGTGATACAATTTATACCACCTACGAATTCTCCCCAGTTACCTGGAGCAGTATTTAGGACATTTTTAC
ccttgttc CT-rich tract
tatatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaataatatttctttcttatttgagggtaaaattctgtgaactattgtgctattggacatagtttgctatatttctgagtataccttgttcaaatgtagATTGAAGAGAAGCATAGGGACCTTTGTCGCTTAGTGATACAATTTATACCACCTACGAATTCTCCCCAGTTACCTGGAGCAGTATTTAGGACATTTTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - -ttgaggg
- - - - - - - - - - - - - - - - -ttctgtg
- - - - - - - - - - - - - - - - - - - - - - - - -gctattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taccttg