1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaatgatttttcttccatgacattttttcttttgcaaaatataagacagtaactattaagaatcttggaaatttggaggaactgatcttagcatcaaaaatatttttcttttccagtaaataattttaccctttggaattcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCAAACGCCAATGTGAAGGTCTCCTTGGAAA
species | Glycine max |
transcript | GLYMA04G39700.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAG ACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCAEST: gi|192317427|gb|FK008935.1|FK008935
genomic: CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAGgtaaatgatt ... tcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCA
EST: CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAG ACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCAEST: gi|151411551|gb|EV281362.1|EV281362
genomic: CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAGgtaaatgatt ... tcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCA
EST: CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAG ACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCAEST: gi|46492802|gb|CN472358.1|CN472358
genomic: CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAGgtaaatgatt ... tcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCA
EST: CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAG ACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCA
genomic: CTGATTCTCGCCCACTTCTACATTATGAAGGAGGAGATGCATACACAAAGgtaaatgatt ... tcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCA
caaaaatatttttcttttccagtaaataattttaccctttggaattcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCAAACGCCAATGTGAAGGTCTCCTTGGAAA
ttcacct CT-rich tract
atatttttcttttcca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgatttttcttccatgacattttttcttttgcaaaatataagacagtaactattaagaatcttggaaatttggaggaactgatcttagcatcaaaaatatttttcttttccagtaaataattttaccctttggaattcacctgcagACTATCACGCATTTGTCTTCCCTTTTTGAAGAAAGAAGTGAAGCATATGCAAACGCCAATGTGAAGGTCTCCTTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC