1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagattcctaatgtaagtgtttgtgtatcacaacagaaatattctatttcatgcacgcattaaagtttctgctgaacattttctgcatttatggaagcagTGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATTCAAGCACTATGGAGAGCCTTTTTTTCGTAATAAGGAG
species | Glycine max |
transcript | GLYMA04G39700.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGTGGGACGGATATTGTCAGAGGCCCTTTCTTATTCGTTTTATGATAG TGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATTEST: gi|4260282|gb|AI416778.1|AI416778
genomic: ACTGTGGGACGGATATTGTCAGAGGCGCTTTCTTATTCGTTTTATGATAGgttagtgtgg ... atggaagcagTGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATT
EST: ACTGTGGGACGGATATTGTCAGAGGCGCTTTCTTATTCGTTTTATGATAG TGATGCATTGGTGGTGAAAGAGGTTEST: gi|192317398|gb|FK008934.1|FK008934
genomic: ACTGTGGGACGGATATTGTCAGAGGCGCTTTCTTATTCGTTTTATGATAGgttagtgtgg ... atggaagcagTGATGCATTGGTGGTGAAGGAGGTT
EST: ACTGTGGGACGGATATTGTCAGAGGCGCTTTCTTATTCGTTTTATGATAG TGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATTEST: gi|298199157|gb|HO042520.1|HO042520
genomic: ACTGTGGGACGGATATTGTCAGAGGCGCTTTCTTATTCGTTTTATGATAGgttagtgtgg ... atggaagcagTGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATT
EST: ACTGTGGGACGGATATTGTCAGAGGCGCTTTCTTATTCGTTTTATGATAG TGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATTEST: gi|151411551|gb|EV281362.1|EV281362
genomic: ACTGTGGGACGGATATTGTCAGAGGCGCTTTCTTATTCGTTTTATGATAGgttagtgtgg ... atggaagcagTGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATT
EST: ACTGTGGGACGGATATTGTCAGAGGCGCTTTCTTATTCGTTTTATGATAG TGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATTEST: gi|46492802|gb|CN472358.1|CN472358
genomic: ACTGTGGGACGGATATTGTCAGAGGCGCTTTCTTATTCGTTTTATGATAGgttagtgtgg ... atggaagcagTGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATT
EST: TCTTATTCGTTTTATGATAG TGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATT
genomic: TCTTATTCGTTTTATGATAGgttagtgtgg ... atggaagcagTGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATT
atttcatgcacgcattaaagtttctgctgaacattttctgcatttatggaagcagTGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATTCAAGCACTATGGAGAGCCTTTTTTTCGTAATAAGGAG
attaaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagattcctaatgtaagtgtttgtgtatcacaacagaaatattctatttcatgcacgcattaaagtttctgctgaacattttctgcatttatggaagcagTGATGCATTGGTGGTGAAGGAGGTTGGTGGAATATCTGTAACTGATATATTCAAGCACTATGGAGAGCCTTTTTTTCGTAATAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG