Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACGAAGAGGAGCTCACGGCTTCTGCCACTAACAATGCAAACACTGTCCACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccctcacctgcttcatcattcttattttattagtttagctactatttgttggtattgtggaaaattgggaatagtaattcaaattgattatac...

Basic information

species Glycine max
transcript GLYMA04G39680.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17154032|gb|BM143965.1|BM143965
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|6201140|gb|AW153240.1|AW153240
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|9984786|gb|BE658894.1|BE658894
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|13481984|gb|BG511327.1|BG511327
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|7283529|gb|AW596135.1|AW596135
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|22523107|gb|BU081918.1|BU081918
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|18733227|gb|BM527491.1|BM527491
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|9902435|gb|BE611403.1|BE611403
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|6200979|gb|AW153079.1|AW153079
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|151393256|gb|EV263131.1|EV263131
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|19937401|gb|BQ081275.1|BQ081275
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|9901079|gb|BE610047.1|BE610047
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|26058841|gb|CA801755.1|CA801755
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|20812922|gb|BQ297400.1|BQ297400
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|15202098|gb|BI425221.1|BI425221
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|58017498|gb|CX704240.1|CX704240
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|7590580|gb|AW706329.1|AW706329
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|20812921|gb|BQ297399.1|BQ297399
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCCAGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCTTGATTC
EST: gi|10846374|gb|BF069283.1|BF069283
EST:     ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACT                         TCCGAG-AGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCT
genomic: ACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccc ... gtcttgacagTCC-AGGAGGAGCTTCCTGAGCTACTTCAACTGTTGCGTAAAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAACGAAGAGGAGCTCACGGCTTCTGCCACTAACAATGCAAACACTGTCCACAGTGATGAGCACCAGCACCCCCACTACAACCAAACCAACTCTCCAACTgtaagatccctcacctgcttcatcattcttattttattagtttagctactatttgttggtattgtggaaaattgggaatagtaattcaaattgattatac

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