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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTATCTAGCATCCTTTTATCAACAAAGCCTGTGCCAAATCTCTCTCTCTCTCTCTCTCTCAAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctgatttctctctctttctaaacgcgtccgttcattttcccctgagacgatgttttgtgtttggcggctaaggaaaaaaaaataataataatc...

Basic information

species Glycine max
transcript GLYMA04G39680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17154032|gb|BM143965.1|BM143965
EST:     GATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: GATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|6201140|gb|AW153240.1|AW153240
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|9984786|gb|BE658894.1|BE658894
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|13481984|gb|BG511327.1|BG511327
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|7283529|gb|AW596135.1|AW596135
EST:     TGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: TGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|22523107|gb|BU081918.1|BU081918
EST:     GATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: GATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|6200979|gb|AW153079.1|AW153079
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|151393256|gb|EV263131.1|EV263131
EST:     CTCTCTCTCAAGATCTGAAATCACTCTGATGGAGCAGAATAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: CTCTCTCTCAAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|19937401|gb|BQ081275.1|BQ081275
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|9901079|gb|BE610047.1|BE610047
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|26058841|gb|CA801755.1|CA801755
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|20812922|gb|BQ297400.1|BQ297400
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|15202098|gb|BI425221.1|BI425221
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|58017498|gb|CX704240.1|CX704240
EST:     AGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|7590580|gb|AW706329.1|AW706329
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|20812921|gb|BQ297399.1|BQ297399
EST:     AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
genomic: AAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG
EST: gi|10846374|gb|BF069283.1|BF069283
EST:     AATCACTCTGATGGAGCAGAGTAAGGAG                         AAAAATGCTCCTTGGTTATCAGTGCCACAGTTTTGGGACTGGGATCAGAAG
genomic: AATCACTCTGATGGAGCAGAGTAAGGAGgttagttctg ... ttctctgtagAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCTATCTAGCATCCTTTTATCAACAAAGCCTGTGCCAAATCTCTCTCTCTCTCTCTCTCTCAAGATCTGAAATCACTCTGATGGAGCAGAGTAAGGAGgttagttctgatttctctctctttctaaacgcgtccgttcattttcccctgagacgatgttttgtgtttggcggctaaggaaaaaaaaataataataatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaaa