Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGCCGGCGTCTACAAAGGCGTCACCACCAGCCAACTCGACGAGTTGGCCGCCGAAACCGCCGCCGCCATGACCACCAACCATCCCGACTACGCTTGCgttagttccctcaaatttctattccatttgatgaaattgtgtgtcttggatggatggattattgtaagtgattttgtttgttgttgcag

Basic information

species Glycine max
transcript GLYMA04G39500.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 1
CTGCGCCGGCGTCTACAAAGGCGTCACCACCAGCCAACTCGACGAGTTGGCCGCCGAAACCGCCGCCGCCATGACCACCAACCATCCCGACTACGCTTGCgttagttccctcaaatttctattccatttgatgaaattgtgtgtcttggatggatggattattgt-aagtgattttgtttgttgttgcag-------------
|||||||||||||||||| ||||||||||||||||| |||| |||| | || || || |||||||||||||||||| ||  ||| ||||||||||| |  || ||  ||  |      ||  ||| |  | |  |   |   |||| ||  |    |||  || |  | ||  | ||   | || | ||              
CTGCGCCGGCGTCTACAAGGGCGTCACCACCAGCCAGCTCGGCGAGCTCGCGGCGGAGACCGCCGCCGCCATGACCGCCTCCCACCCCGACTACGCCTCGgtaaggccctccgcga--ctgatccgtacgctacacgcggtcgtctggggcgatccgatggttattgactggatgtggc-gctgattcatttacactgtgaag

upper sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 1
CTGCGCCGGCGTCTACAAAGGCGTCACCACCAGCCAACTCGACGAGTTGGCCGCCGAAACCGCCGCCGCCATGACCACCAACCATCCCGACTACGCTTGCgttagttccctcaaatttctattccatttgatgaaattgtgtgtcttggatggatggattattgta---agtgattttgtttgttgttgcag--
 ||||| || || ||||| ||||||||||||||||| ||||||||| | || ||||| || ||||||||||||||| |   ||| ||||||||||| |  || |   ||    || ||| |      ||| |    ||||    | |       |   || |        |  || | | ||| |||||     
ATGCGCGGGTGTGTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGCGTCCCACCCCGACTACGCCTCGgtaacagccactgaacttc-accgttgttggtttttttgttccccattcggtagtaccttgtctcctcctgacatgtggattgctgttgtgaag

upper sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 1
CTGCGCCGGCGTCTACAAAGGCGTCACCACCAGCCAACTCGACGAGTTGGCCGCCGAAACCGCCGCCGCCATGACCACCAACCATCCCGACTACGCTTGCgttagt----tccctcaaatttctattccatttgatgaaattgtgtgtcttggatggatggattat-tgtaagtgattttgtttgt--tgttgcag-------------------------------------
||| || || |||||||| ||||||||||||||||| ||||||||| | |||||||| |||||||| ||||||||| |   ||| ||||||||||| |  || |||      || | || | ||  |||  |   ||   |||   || |  | |     |  | | |||  ||  || ||| |||  ||  |  |                                     
CTGTGCGGGGGTCTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCCGCCGAGACCGCCGCGGCCATGACCGCGTCCCACCCCGACTACGCCTCGgtgagtaacccaccccgaaatcctcctcccctc--tggccttg---gtttcagctctcctgtctgtctgtctgtctttctgtctgtgctgacgtggggttggttgcccctgttctctgtcgtgattcgtgaag

upper sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 1
CTGCGCCGGCGTCTACAAAGGCGTCACCACCAGCCAACTCGACGAGTTGGCCGCCGAAACCGCCGCCGCCATGACCACCAACCATCCCGACTACGCTTGCgttag-----ttccctcaaatttctattccattt-gatgaaattgtgtgtcttggatggatggat-tattgtaagtgat-tttgtttgttgttgcag---------
|||||| || |||||||| ||||||||||||||||| ||||||||| | |||||||| ||||| || ||||||||  |   ||| ||||||||||| |  || ||       || | ||||  |   |   |||  |      ||| |||||| | ||    ||  |   ||  ||    | | ||   | | |            
CTGCGCGGGGGTCTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCCGCCGAGACCGCGGCGGCCATGACTGCGTCCCACCCCGACTACGCCTCGgtgaggaacccaccgtgaaatccccccttggtttcaactctcatgtctgtctttgttgtcctgacgtggggttggtttcctctcttctctatcgtgattcgtgaag

upper sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 1
CTGCGCCGGCGTCTACAAAGGCGTCACCACCAGCCAACTCGACGAGTTGGCCGCCGAAACCGCCGCCGCCATGACCACCAACCATCCCGACTACGCTTGCgttagttc----cctcaaatttctattccatttgatgaaattgtgtgtcttggatggatggatt-attgtaagtgattttgtttg----ttgttgcag---
 ||||| || |||||||| |||||||| |||||||| || || || |||||||| ||||||||||| || |||||  |||| || ||||| || || |  ||| |||     |||   |||||| |||  |||    |  |||| |    |  || | |  ||| ||| |  ||| |  | ||||    ||| | | |   
GTGCGCTGGGGTCTACAAGGGCGTCACTACCAGCCAGCTTGATGAATTGGCCGCTGAAACCGCCGCTGCTATGACTGCCAATCACCCCGATTATGCCTCGgttggtttttctccttttatttct-ttctttttctccattttgtcttaaatacataggttaattgattatgggtggtcatttttgaaacttggttctgttt